Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66510 - ( GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) carbonate dehydratase )

44 Proteins interacs with AT5G66510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G03860

Experimental

FSW = 0.0941

Class A:

mitochondrion

Class B:

vacuole

unclear

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPHB2 (PROHIBITIN 2)
AT5G40770

Experimental

FSW = 0.1283

Class A:

mitochondrion

Class B:

vacuole

unclear

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPHB3 (PROHIBITIN 3)
AT4G28510

Experimental

FSW = 0.1661

Class A:

mitochondrion

Class B:

vacuole

unclear

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPHB1 (PROHIBITIN 1)
AT3G48680

Experimental

FSW = 0.1451

Class A:

mitochondrion

Class B:

vacuole

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2) TRANSFERASE
AT5G44140

Experimental

FSW = 0.2017

Class A:

mitochondrion

Class B:

vacuole

plasma membrane

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPHB7 (PROHIBITIN 7)
AT2G20530

Experimental

FSW = 0.1661

Class A:

mitochondrion

Class B:

vacuole

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPHB6 (PROHIBITIN 6)
AT2G27730

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class B:

unclear

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 UNKNOWN PROTEIN
AT3G47930

Experimental

biochemical

FSW = 0.6924

Class A:

mitochondrion

Class B:

unclear

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATGLDH (L-GALACTONO-14-LACTONE DEHYDOROGENASE) L-GULONO-14-LACTONE DEHYDROGENASE/ GALACTONOLACTONE DEHYDROGENASE
AT2G33220

Experimental

FSW = 0.1071

Class A:

mitochondrion

Class B:

unclear

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN PHOTORESPIRATION LOCATED IN MITOCHONDRION MITOCHONDRIAL MEMBRANE PLASTID RESPIRATORY CHAIN COMPLEX I EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GRIM-19 (INTERPROIPR009346) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MEE4 (MATERNAL EFFECT EMBRYO ARREST 4) (TAIRAT1G046301) HAS 226 BLAST HITS TO 226 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 125 FUNGI - 53 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 10 (SOURCE NCBI BLINK)
AT5G52840

Experimental

FSW = 0.1633

Class A:

mitochondrion

Class B:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 NADH-UBIQUINONE OXIDOREDUCTASE-RELATED
AT2G20360

Experimental

FSW = 0.0750

Class A:

mitochondrion

Class B:

plasma membrane

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 BINDING / CATALYTIC/ COENZYME BINDING
AT5G08530

Experimental

FSW = 0.1818

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 CI51 (51 KDA SUBUNIT OF COMPLEX I) 4 IRON 4 SULFUR CLUSTER BINDING / FMN BINDING / NAD OR NADH BINDING / NADH DEHYDROGENASE (UBIQUINONE)/ OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT2G31490

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 UNKNOWN PROTEIN
AT5G47890

Experimental

FSW = 0.0851

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT PUTATIVE
AT1G67350

Experimental

FSW = 0.0851

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 UNKNOWN PROTEIN
AT1G79010

Experimental

FSW = 0.0938

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 NADH-UBIQUINONE OXIDOREDUCTASE 23 KDA SUBUNIT MITOCHONDRIAL (TYKY)
AT3G12260

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN
AT4G02580

Experimental

FSW = 0.1000

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE
AT5G63510

Experimental

FSW = 0.1633

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1) CARBONATE DEHYDRATASE
AT5G37510

Experimental

FSW = 0.1000

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 EMB1467 (EMBRYO DEFECTIVE 1467) NADH DEHYDROGENASE (UBIQUINONE)/ NADH DEHYDROGENASE/ ELECTRON CARRIER/ IRON-SULFUR CLUSTER BINDING / OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT5G11770

Experimental

FSW = 0.1306

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT MITOCHONDRIAL
AT2G42310

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 UNKNOWN PROTEIN
AT2G02050

Experimental

FSW = 0.0938

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

 NADH-UBIQUINONE OXIDOREDUCTASE B18 SUBUNIT PUTATIVE
AT2G02510

Experimental

FSW = 0.0851

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

 UNKNOWN PROTEIN
AT3G03100

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

 NADHUBIQUINONE OXIDOREDUCTASE FAMILY PROTEIN
AT5G67590

Experimental

FSW = 0.0938

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

 FRO1 (FROSTBITE1) NADH DEHYDROGENASE (UBIQUINONE)
AT2G47690

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class D:

cytosol (p = 0.67)

 NADH-UBIQUINONE OXIDOREDUCTASE-RELATED
AT1G49140

Experimental

FSW = 0.1250

Class A:

mitochondrion

Class D:

cytosol (p = 0.67)

 NADH-UBIQUINONE OXIDOREDUCTASE-RELATED
AT3G18410

Experimental

FSW = 0.0851

Class A:

mitochondrion

Class D:

cytosol (p = 0.67)

 NADH-UBIQUINONE OXIDOREDUCTASE-RELATED
ATMG00510Experimental

FSW = 0.0938

Class A:

mitochondrion

 NADH DEHYDROGENASE SUBUNIT 7
ATMG00070Experimental

FSW = 0.1451

Class A:

mitochondrion

 NADH DEHYDROGENASE SUBUNIT 9
ATMG00516Experimental

FSW = 0.1451

Class A:

mitochondrion

 ENCODES SUBUNIT OF MITOCHONDRIAL NAD(P)H DEHYDROGENASE THAT IS TRANS-SPLICED FROM THREE PRECURSORS NAD1A NAD1B AND NAD1C
ATMG00060Experimental

FSW = 0.1250

Class A:

mitochondrion

 MITOCHONDRIAL NADH DEHYDROGENASE SUBUNIT 5 THE GENE IS TRANS-SPLICED FROM THE THREE DIFFERENT PRE-CURSORS NAD5A NAD5B AND NAD5C
AT5G14740

Experimental

FSW = 0.0486

Class B:

plastid

plasma membrane

mitochondrion

cytosol

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 CA2 (CARBONIC ANHYDRASE 2) CARBONATE DEHYDRATASE/ ZINC ION BINDING
AT1G68680

Experimental

FSW = 0.0851

Class B:

plastid

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 UNKNOWN PROTEIN
ATMG01320Experimental

FSW = 0.0851

Unknown

 ENCODES SUBUNIT OF MITOCHONDRIAL NAD(P)H DEHYDROGENASE THAT IS TRANS-SPLICED FROM TWO PRECURSORS NAD2A AND NAD2B
ATMG00580Experimental

FSW = 0.0851

Unknown

 NADH DEHYDROGENASE SUBUNIT 4
ATMG00270Experimental

FSW = 0.0851

Unknown

 NADH DEHYDROGENASE SUBUNIT 6
AT1G76200

Experimental

FSW = 0.0851

Unknown

 UNKNOWN PROTEIN
AT4G00585

Experimental

FSW = 0.0851

Unknown

 UNKNOWN PROTEIN
AT5G47570

Experimental

FSW = 0.0851

Unknown

 UNKNOWN PROTEIN
AT1G19580

Experimental

FSW = 0.0851

Unknown

 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) CARBONATE DEHYDRATASE
AT3G06310

Experimental

FSW = 0.0681

Unknown

 NADH-UBIQUINONE OXIDOREDUCTASE 19 KDA SUBUNIT (NDUFA8) FAMILY PROTEIN
AT1G47260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1018

Class C:

mitochondrion

 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) CARBONATE DEHYDRATASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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