Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66590 - ( allergen V5/Tpx-1-related family protein )
38 Proteins interacs with AT5G66590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31470 | PredictedGene fusion methodCo-expression | FSW = 0.0170
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0833
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT5G24770 | PredictedSynthetic Lethality | FSW = 0.1391
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT4G14800 | PredictedSynthetic Lethality | FSW = 0.0371
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G01410 | PredictedAffinity Capture-MS | FSW = 0.0292
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G07890 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1023
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT1G23310 | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G20550 | Predictedco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0277
| Unknown | DDL (DAWDLE) |
AT3G55400 | PredictedSynthetic Lethality | FSW = 0.0421
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT5G06290 | PredictedSynthetic Lethality | FSW = 0.0155
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.0615
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G49370 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT2G38880 | PredictedSynthetic Lethality | FSW = 0.0346
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT4G18880 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT2G20510 | PredictedSynthetic Lethality | FSW = 0.0604
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT2G41380 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MS | FSW = 0.0618
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0325
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT2G22540 | PredictedPhenotypic Enhancement | FSW = 0.0438
| Unknown | SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING |
AT3G13900 | PredictedAffinity Capture-MS | FSW = 0.0592
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT1G05180 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT5G24840 | Predictedsynthetic growth defectsynthetic growth defectSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic RescueSynthetic Rescuesynthetic growth defectAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic LethalityAffinity Capture-MSCo-purificationPhenotypic Suppression | FSW = 0.0544
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G10090 | PredictedSynthetic Lethality | FSW = 0.0051
| Unknown | UNKNOWN PROTEIN |
AT1G20693 | Predictedsynthetic growth defect | FSW = 0.0194
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0696
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G55810 | Predictedsynthetic growth defect | FSW = 0.0207
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G66590 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0293
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G01830 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0317
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G31260 | PredictedSynthetic Lethality | FSW = 0.0703
| Unknown | APG9 (AUTOPHAGY 9) |
AT3G18370 | Predictedsynthetic growth defect | FSW = 0.1524
| Unknown | ATSYTF |
AT3G57140 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | PATATIN-RELATED |
AT3G62930 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT4G32930 | PredictedPhenotypic Enhancement | FSW = 0.0357
| Unknown | UNKNOWN PROTEIN |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | SUGAR TRANSPORTER PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454