Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66760 - ( SDH1-1 ATP binding / succinate dehydrogenase )
39 Proteins interacs with AT5G66760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G08480 | Experimentalbiochemical | FSW = 0.0952
| Class A:mitochondrionClass B:vacuoleunclearplasma membraneClass D:mitochondrion (p = 0.82) | UNKNOWN PROTEIN |
AT1G47420 | Experimentalbiochemical | FSW = 0.0952
| Class A:mitochondrionClass B:nucleusClass D:mitochondrion (p = 0.82) | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION NUCLEUS EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) CARBONATE DEHYDRATASE (TAIRAT1G472601) HAS 85 BLAST HITS TO 85 PROTEINS IN 16 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G40650 | Experimentalbiochemical | FSW = 0.0808
| Class A:mitochondrionClass D:mitochondrion (p = 0.82) | SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT3G27380 | Experimentalbiochemical | FSW = 0.1039
| Class A:mitochondrionClass D:mitochondrion (p = 0.82) | SDH2-1 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT5G09600 | Experimentalbiochemical | FSW = 0.0952
| Class A:mitochondrionClass D:mitochondrion (p = 0.82) | SDH3-1 SUCCINATE DEHYDROGENASE |
AT1G53000 | Predictedpull down | FSW = 0.0644
| Class C:mitochondrion | CYTIDYLYLTRANSFERASE FAMILY |
AT3G02660 | Predictedpull down | FSW = 0.0238
| Class C:mitochondrion | EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE |
AT1G50940 | Predictedsynthetic growth defect | FSW = 0.1119
| Class C:mitochondrion | ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA) FAD BINDING / ELECTRON CARRIER |
AT2G43400 | Predictedpull down | FSW = 0.0544
| Class C:mitochondrion | ETFQO (ELECTRON-TRANSFER FLAVOPROTEINUBIQUINONE OXIDOREDUCTASE) CATALYTIC/ ELECTRON CARRIER/ ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE |
AT5G23250 | Predictedpull down | FSW = 0.0909
| Class C:mitochondrion | SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE |
AT2G47510 | Predictedpull down | FSW = 0.0062
| Class C:mitochondrion | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G20420 | Predictedpull down | FSW = 0.0559
| Class C:mitochondrion | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT3G45300 | Predictedpull down | FSW = 0.0635
| Class C:mitochondrion | IVD (ISOVALERYL-COA-DEHYDROGENASE) ATP BINDING / ISOVALERYL-COA DEHYDROGENASE |
AT2G18450 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0216
| Class C:mitochondrion | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G16210 | Predictedpull down | FSW = 0.0423
| Unknown | ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) CATALYTIC |
AT4G26300 | Predictedpull down | FSW = 0.0238
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G03680 | Predictedtandem affinity purification | FSW = 0.0355
| Unknown | ATHM1 ENZYME ACTIVATOR |
AT5G04590 | Predictedpull down | FSW = 0.0930
| Unknown | SIR SULFITE REDUCTASE (FERREDOXIN)/ SULFITE REDUCTASE |
AT5G15450 | Predictedpull down | FSW = 0.0145
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G55220 | Predictedpull down | FSW = 0.0894
| Unknown | TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN |
AT5G14760 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0445
| Unknown | AO (L-ASPARTATE OXIDASE) L-ASPARTATE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE |
AT2G30390 | Predictedpull down | FSW = 0.0195
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
ATCG00160 | Predictedpull down | FSW = 0.0353
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
ATCG00180 | Predictedpull down | FSW = 0.0497
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00190 | Predictedpull down | FSW = 0.0323
| Unknown | CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION |
AT5G44790 | Predictedpull down | FSW = 0.0201
| Unknown | RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G53350 | Predictedpull down | FSW = 0.0441
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G63960 | Predictedpull down | FSW = 0.0048
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G79500 | Predictedpull down | FSW = 0.0383
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
AT1G10170 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G51680 | Predictedpull down | FSW = 0.0492
| Unknown | 4CL1 (4-COUMARATECOA LIGASE 1) 4-COUMARATE-COA LIGASE |
AT2G04560 | Predictedpull down | FSW = 0.0523
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G25100 | Predictedpull down | FSW = 0.0147
| Unknown | RIBONUCLEASE HII FAMILY PROTEIN |
AT2G27860 | Predictedpull down | FSW = 0.0346
| Unknown | AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) NAD OR NADH BINDING / UDP-GLUCURONATE DECARBOXYLASE |
AT4G21220 | Predictedpull down | FSW = 0.0364
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G29120 | Predictedpull down | FSW = 0.0381
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE NAD-BINDING DOMAIN-CONTAINING PROTEIN |
AT4G03240 | PredictedAffinity Capture-Westernsynthetic growth defectinteraction prediction | FSW = 0.1648
| Unknown | FH (FRATAXIN HOMOLOG) |
AT1G62590 | PredictedGene fusion method | FSW = 0.0527
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT3G05130 | PredictedGene fusion method | FSW = 0.0515
| Unknown | UNKNOWN PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454