Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G66760 - ( SDH1-1 ATP binding / succinate dehydrogenase )

39 Proteins interacs with AT5G66760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G08480

Experimental

biochemical

FSW = 0.0952

Class A:

mitochondrion

Class B:

vacuole

unclear

plasma membrane

Class D:

mitochondrion (p = 0.82)

UNKNOWN PROTEIN
AT1G47420

Experimental

biochemical

FSW = 0.0952

Class A:

mitochondrion

Class B:

nucleus

Class D:

mitochondrion (p = 0.82)

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION NUCLEUS EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) CARBONATE DEHYDRATASE (TAIRAT1G472601) HAS 85 BLAST HITS TO 85 PROTEINS IN 16 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT5G40650

Experimental

biochemical

FSW = 0.0808

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT3G27380

Experimental

biochemical

FSW = 0.1039

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

SDH2-1 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE
AT5G09600

Experimental

biochemical

FSW = 0.0952

Class A:

mitochondrion

Class D:

mitochondrion (p = 0.82)

SDH3-1 SUCCINATE DEHYDROGENASE
AT1G53000

Predicted

pull down

FSW = 0.0644

Class C:

mitochondrion

CYTIDYLYLTRANSFERASE FAMILY
AT3G02660

Predicted

pull down

FSW = 0.0238

Class C:

mitochondrion

EMB2768 (EMBRYO DEFECTIVE 2768) ATP BINDING / RNA BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE
AT1G50940

Predicted

synthetic growth defect

FSW = 0.1119

Class C:

mitochondrion

ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA) FAD BINDING / ELECTRON CARRIER
AT2G43400

Predicted

pull down

FSW = 0.0544

Class C:

mitochondrion

ETFQO (ELECTRON-TRANSFER FLAVOPROTEINUBIQUINONE OXIDOREDUCTASE) CATALYTIC/ ELECTRON CARRIER/ ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE
AT5G23250

Predicted

pull down

FSW = 0.0909

Class C:

mitochondrion

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT2G47510

Predicted

pull down

FSW = 0.0062

Class C:

mitochondrion

FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE
AT2G20420

Predicted

pull down

FSW = 0.0559

Class C:

mitochondrion

SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT3G45300

Predicted

pull down

FSW = 0.0635

Class C:

mitochondrion

IVD (ISOVALERYL-COA-DEHYDROGENASE) ATP BINDING / ISOVALERYL-COA DEHYDROGENASE
AT2G18450

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0216

Class C:

mitochondrion

SDH1-2 SUCCINATE DEHYDROGENASE
AT4G16210

Predicted

pull down

FSW = 0.0423

Unknown

ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) CATALYTIC
AT4G26300

Predicted

pull down

FSW = 0.0238

Unknown

EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G03680

Predicted

tandem affinity purification

FSW = 0.0355

Unknown

ATHM1 ENZYME ACTIVATOR
AT5G04590

Predicted

pull down

FSW = 0.0930

Unknown

SIR SULFITE REDUCTASE (FERREDOXIN)/ SULFITE REDUCTASE
AT5G15450

Predicted

pull down

FSW = 0.0145

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G55220

Predicted

pull down

FSW = 0.0894

Unknown

TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT5G14760

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0445

Unknown

AO (L-ASPARTATE OXIDASE) L-ASPARTATE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE
AT2G30390

Predicted

pull down

FSW = 0.0195

Unknown

FC2 (FERROCHELATASE 2) FERROCHELATASE
ATCG00160Predicted

pull down

FSW = 0.0353

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00180Predicted

pull down

FSW = 0.0497

Unknown

RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

pull down

FSW = 0.0323

Unknown

CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
AT5G44790

Predicted

pull down

FSW = 0.0201

Unknown

RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER
AT5G53350

Predicted

pull down

FSW = 0.0441

Unknown

CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G63960

Predicted

pull down

FSW = 0.0048

Unknown

EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G79500

Predicted

pull down

FSW = 0.0383

Unknown

2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA)
AT1G10170

Predicted

two hybrid

two hybrid

FSW = 0.0112

Unknown

ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G51680

Predicted

pull down

FSW = 0.0492

Unknown

4CL1 (4-COUMARATECOA LIGASE 1) 4-COUMARATE-COA LIGASE
AT2G04560Predicted

pull down

FSW = 0.0523

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G25100

Predicted

pull down

FSW = 0.0147

Unknown

RIBONUCLEASE HII FAMILY PROTEIN
AT2G27860

Predicted

pull down

FSW = 0.0346

Unknown

AXS1 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 1) NAD OR NADH BINDING / UDP-GLUCURONATE DECARBOXYLASE
AT4G21220

Predicted

pull down

FSW = 0.0364

Unknown

BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT4G29120

Predicted

pull down

FSW = 0.0381

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE NAD-BINDING DOMAIN-CONTAINING PROTEIN
AT4G03240

Predicted

Affinity Capture-Western

synthetic growth defect

interaction prediction

FSW = 0.1648

Unknown

FH (FRATAXIN HOMOLOG)
AT1G62590

Predicted

Gene fusion method

FSW = 0.0527

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G05130

Predicted

Gene fusion method

FSW = 0.0515

Unknown

UNKNOWN PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454