Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67220 - ( nitrogen regulation family protein )

13 Proteins interacs with AT5G67220
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0125

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0050

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G19690

Predicted

biochemical

interologs mapping

FSW = 0.0711

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT3G33520

Predicted

two hybrid

two hybrid

FSW = 0.0385

Unknown

ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G50920

Predicted

Affinity Capture-MS

FSW = 0.0114

Unknown

GTP-BINDING PROTEIN-RELATED
AT1G03110

Predicted

synthetic growth defect

FSW = 0.1925

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G34460Predicted

Affinity Capture-MS

FSW = 0.0179

Unknown

CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT3G06470

Predicted

Affinity Capture-MS

FSW = 0.0210

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT4G26510

Predicted

Affinity Capture-MS

FSW = 0.0137

Unknown

ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT5G24840

Predicted

synthetic growth defect

FSW = 0.0439

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT3G52890

Predicted

biochemical

FSW = 0.2092

Unknown

KIPK (KCBP-INTERACTING PROTEIN KINASE) KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G62930

Predicted

Synthetic Lethality

Synthetic Lethality

Affinity Capture-MS

interologs mapping

FSW = 0.1422

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G08500

Predicted

biochemical

FSW = 0.0311

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454