Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67450 - ( AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) DNA binding / nucleic acid binding / transcription factor/ transcription repressor/ zinc ion binding )

5 Proteins interacs with AT5G67450
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07470

Predicted

two hybrid

FSW = 0.0256

Class C:

nucleus

TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT2G46430

Predicted

two hybrid

FSW = 0.0800

Unknown

ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) CALMODULIN BINDING / CYCLIC NUCLEOTIDE BINDING / ION CHANNEL
AT4G33720

Predicted

two hybrid

FSW = 0.0196

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G26990

Predicted

two hybrid

FSW = 0.0426

Unknown

FUS12 (FUSCA 12)
AT5G11010

Predicted

two hybrid

FSW = 0.0410

Unknown

PRE-MRNA CLEAVAGE COMPLEX-RELATED

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454