Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67500 - ( VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) voltage-gated anion channel )

49 Proteins interacs with AT5G67500
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0236

Class C:

vacuole

unclear

plastid

mitochondrion

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT3G01280

Predicted

Gene fusion method

Co-expression

FSW = 0.0280

Class C:

vacuole

unclear

plastid

mitochondrion

VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL
AT5G40770

Predicted

Affinity Capture-Western

FSW = 0.0357

Class C:

vacuole

unclear

mitochondrion

ATPHB3 (PROHIBITIN 3)
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0442

Class C:

vacuole

plastid

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G17360

Predicted

Affinity Capture-MS

FSW = 0.0681

Class C:

vacuole

plastid

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT3G23990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0260

Class C:

vacuole

mitochondrion

HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING
AT2G37270

Predicted

Affinity Capture-MS

FSW = 0.0302

Class C:

vacuole

ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G64790Predicted

Affinity Capture-MS

FSW = 0.0193

Class C:

vacuole

BINDING
AT3G22845

Predicted

Affinity Capture-MS

FSW = 0.0088

Class C:

vacuole

EMP24/GP25L/P24 PROTEIN-RELATED
AT5G07090

Predicted

interologs mapping

FSW = 0.0555

Class C:

vacuole

40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT1G14320

Predicted

interologs mapping

FSW = 0.1058

Class C:

vacuole

SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G33650

Predicted

Synthetic Rescue

FSW = 0.0413

Class C:

plastid

mitochondrion

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G20290

Predicted

Affinity Capture-MS

FSW = 0.0334

Class C:

plastid

40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT5G64270

Predicted

Synthetic Lethality

FSW = 0.0207

Class C:

plastid

SPLICING FACTOR PUTATIVE
AT1G48860

Predicted

Phenotypic Suppression

Synthetic Lethality

FSW = 0.0243

Class C:

plastid

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G10070

Predicted

interologs mapping

FSW = 0.0387

Class C:

plastid

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G17530

Predicted

Co-purification

FSW = 0.0627

Class C:

mitochondrion

ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G50400

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0741

Class C:

mitochondrion

PORIN FAMILY PROTEIN
AT5G17770

Predicted

Affinity Capture-MS

FSW = 0.0184

Unknown

ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT1G07670

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

CALCIUM-TRANSPORTING ATPASE
AT2G27500

Predicted

biochemical

FSW = 0.0295

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G53870

Predicted

Phenotypic Suppression

FSW = 0.0735

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT2G20580

Predicted

Affinity Capture-MS

FSW = 0.0296

Unknown

RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR
AT5G43900

Predicted

biochemical

FSW = 0.0459

Unknown

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT1G79020

Predicted

interologs mapping

FSW = 0.0169

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G34430

Predicted

Synthetic Lethality

FSW = 0.0120

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G67730

Predicted

Affinity Capture-MS

FSW = 0.0056

Unknown

YBR159 KETOREDUCTASE/ OXIDOREDUCTASE
AT4G21710

Predicted

Affinity Capture-MS

FSW = 0.0081

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0255

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G03950

Predicted

two hybrid

FSW = 0.0252

Unknown

PROTEIN BINDING
AT5G58290

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT4G16420

Predicted

Synthetic Lethality

FSW = 0.0080

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT1G07340

Predicted

biochemical

FSW = 0.0136

Unknown

ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G29940Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT2G36060

Predicted

biochemical

FSW = 0.0282

Unknown

UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN
AT2G39770

Predicted

Affinity Capture-MS

FSW = 0.0778

Unknown

CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT1G01910

Predicted

Affinity Capture-MS

FSW = 0.0123

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT1G10210

Predicted

interologs mapping

FSW = 0.0374

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G31660

Predicted

Affinity Capture-MS

FSW = 0.0354

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT2G28360

Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT3G05090

Predicted

Affinity Capture-MS

FSW = 0.0154

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G16565

Predicted

synthetic growth defect

FSW = 0.0154

Unknown

ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G60240

Predicted

Synthetic Lethality

FSW = 0.0165

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G14320Predicted

interologs mapping

FSW = 0.1026

Unknown

60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB)
AT4G15475

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT4G30480

Predicted

co-fractionation

Co-fractionation

FSW = 0.0395

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT5G16750

Predicted

Affinity Capture-MS

FSW = 0.0036

Unknown

TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING
AT5G26110

Predicted

Affinity Capture-MS

FSW = 0.0282

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G62030

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454