Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67500 - ( VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) voltage-gated anion channel )
49 Proteins interacs with AT5G67500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0236
| Class C:vacuoleunclearplastidmitochondrion | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G01280 | PredictedGene fusion methodCo-expression | FSW = 0.0280
| Class C:vacuoleunclearplastidmitochondrion | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT5G40770 | PredictedAffinity Capture-Western | FSW = 0.0357
| Class C:vacuoleunclearmitochondrion | ATPHB3 (PROHIBITIN 3) |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0442
| Class C:vacuoleplastid | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0681
| Class C:vacuoleplastid | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G23990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0260
| Class C:vacuolemitochondrion | HSP60 (HEAT SHOCK PROTEIN 60) ATP BINDING |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.0302
| Class C:vacuole | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0193
| Class C:vacuole | BINDING |
AT3G22845 | PredictedAffinity Capture-MS | FSW = 0.0088
| Class C:vacuole | EMP24/GP25L/P24 PROTEIN-RELATED |
AT5G07090 | Predictedinterologs mapping | FSW = 0.0555
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT1G14320 | Predictedinterologs mapping | FSW = 0.1058
| Class C:vacuole | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G33650 | PredictedSynthetic Rescue | FSW = 0.0413
| Class C:plastidmitochondrion | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.0334
| Class C:plastid | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT5G64270 | PredictedSynthetic Lethality | FSW = 0.0207
| Class C:plastid | SPLICING FACTOR PUTATIVE |
AT1G48860 | PredictedPhenotypic SuppressionSynthetic Lethality | FSW = 0.0243
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G10070 | Predictedinterologs mapping | FSW = 0.0387
| Class C:plastid | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT1G17530 | PredictedCo-purification | FSW = 0.0627
| Class C:mitochondrion | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G50400 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0741
| Class C:mitochondrion | PORIN FAMILY PROTEIN |
AT5G17770 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE |
AT1G07670 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT2G27500 | Predictedbiochemical | FSW = 0.0295
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT3G53870 | PredictedPhenotypic Suppression | FSW = 0.0735
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G43900 | Predictedbiochemical | FSW = 0.0459
| Unknown | MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR |
AT1G79020 | Predictedinterologs mapping | FSW = 0.0169
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G34430 | PredictedSynthetic Lethality | FSW = 0.0120
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G67730 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0081
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G03950 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | PROTEIN BINDING |
AT5G58290 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0080
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G07340 | Predictedbiochemical | FSW = 0.0136
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT2G36060 | Predictedbiochemical | FSW = 0.0282
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0778
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT1G01910 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G10210 | Predictedinterologs mapping | FSW = 0.0374
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G31660 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
AT2G28360 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT3G05090 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G16565 | Predictedsynthetic growth defect | FSW = 0.0154
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G60240 | PredictedSynthetic Lethality | FSW = 0.0165
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT4G14320 | Predictedinterologs mapping | FSW = 0.1026
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT4G15475 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G30480 | Predictedco-fractionationCo-fractionation | FSW = 0.0395
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.0036
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G26110 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G62030 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454