Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G67540 - ( glycosyl hydrolase family protein 43 )
61 Proteins interacs with AT5G67540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18140 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G10350 | Predictedco-fractionationCo-fractionationCo-purification | FSW = 0.1126
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0776
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0819
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G08870 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | ARGINASE PUTATIVE |
AT5G60540 | PredictedAffinity Capture-MS | FSW = 0.1970
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT3G47370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0416
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0837
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT2G32670 | PredictedAffinity Capture-Western | FSW = 0.2282
| Unknown | ATVAMP725 |
AT4G08520 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0461
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G02450 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | GLYCINE-RICH PROTEIN |
AT4G12770 | Predictedtwo hybrid | FSW = 0.0227
| Unknown | HEAT SHOCK PROTEIN BINDING |
AT2G37790 | PredictedSynthetic Lethality | FSW = 0.1262
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G04460 | PredictedSynthetic Lethality | FSW = 0.1061
| Unknown | PEX12 PROTEIN BINDING / ZINC ION BINDING |
AT3G03300 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | DCL2 (DICER-LIKE 2) ATP BINDING / ATP-DEPENDENT HELICASE/ RNA BINDING / DOUBLE-STRANDED RNA BINDING / HELICASE/ NUCLEIC ACID BINDING / RIBONUCLEASE III |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0551
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G17590 | Predictedtwo hybrid | FSW = 0.0029
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT4G19610 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0045
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G33520 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | ATARP6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | ZINC ION BINDING |
AT4G25340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1736
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.0592
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G18480 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic SuppressionCo-purification | FSW = 0.3212
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G59470 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT1G52300 | PredictedSynthetic Lethality | FSW = 0.0305
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G60360 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1981
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT5G10330 | PredictedAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0702
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.1475
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G52090 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G29540 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationPhenotypic Suppression | FSW = 0.2401
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G54470 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS) |
AT4G15930 | Predictedtwo hybrid | FSW = 0.0074
| Unknown | MICROTUBULE MOTOR |
AT1G48790 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | MOV34 FAMILY PROTEIN |
AT4G19190 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT1G34770 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | MAGE-8 ANTIGEN-RELATED |
AT2G17870 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | COLD-SHOCK DNA-BINDING FAMILY PROTEIN |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT5G38110 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G54940 | PredictedAffinity Capture-MS | FSW = 0.0608
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G20693 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.1246
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G55300 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1267
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G03130 | PredictedSynthetic Lethality | FSW = 0.1394
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0475
| Unknown | APG9 (AUTOPHAGY 9) |
AT3G06483 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1626
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0424
| Unknown | LPAT5 ACYLTRANSFERASE |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1443
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G19645 | PredictedPhenotypic Enhancement | FSW = 0.1075
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.1317
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT1G26320 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.1261
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G55060 | Predictedsynthetic growth defect | FSW = 0.0101
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0633
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1239
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0920
| Unknown | UNKNOWN PROTEIN |
AT3G11230 | PredictedSynthetic Lethality | FSW = 0.1588
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G21460 | PredictedSynthetic Lethality | FSW = 0.1876
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.1328
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G63150 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0249
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT5G49560 | PredictedPhenotypic Enhancement | FSW = 0.0623
| Unknown | UNKNOWN PROTEIN |
AT3G49880 | PredictedPhylogenetic profile method | FSW = 0.0194
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454