Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G29940 - ( NRPA2 DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding )
58 Proteins interacs with AT1G29940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT1G20010 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0717
| Unknown | HISTONE H4 |
AT3G12580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT4G11010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0535
| Unknown | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G59690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0597
| Unknown | HISTONE H4 |
AT1G07790 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0095
| Unknown | HTB1 DNA BINDING |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | DNA HELICASE PUTATIVE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT1G24807 | PredictedAffinity Capture-MS | FSW = 0.0535
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | DNA HELICASE-RELATED |
AT3G01610 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0116
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G12250 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | PYRUVATE KINASE PUTATIVE |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0112
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G23460 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | BETA-ADAPTIN PUTATIVE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G11380 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0199
| Unknown | BETA-ADAPTIN PUTATIVE |
AT1G12920 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0200
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.0831
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT3G57660 | PredictedSynthetic RescueSynthetic RescueAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.3267
| Unknown | NRPA1 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ ZINC ION BINDING |
AT3G55620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0054
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT3G13940 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinterologs mappingCo-expression | FSW = 0.1980
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G25940 | Predictedtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2386
| Unknown | TRANSCRIPTION FACTOR S-II (TFIIS) DOMAIN-CONTAINING PROTEIN |
AT3G62310 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | RNA HELICASE PUTATIVE |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0780
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G60500 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | CER7 (ECERIFERUM 7) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT5G48870 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0110
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT4G23900 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0521
| Unknown | NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4) |
AT5G26710 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0708
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT5G40820 | PredictedReconstituted Complexbiochemicalinteraction prediction | FSW = 0.0311
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.1552
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.2441
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G29540 | Predictedinteraction predictiontwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingEnriched domain pairCo-expression | FSW = 0.0916
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G20850 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0186
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT2G34750 | Predictedin vivoin vitroAffinity Capture-MSCo-expression | FSW = 0.0362
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G39240 | Predictedin vivoin vitro | FSW = 0.0356
| Unknown | RNA POLYMERASE I TRANSCRIPTION FACTOR/ BINDING |
AT1G04170 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0369
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G25220 | PredictedAffinity Capture-MS | FSW = 0.0508
| Unknown | ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) ANTHRANILATE SYNTHASE |
AT1G54250 | PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pair | FSW = 0.2528
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G60620 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2097
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G34970 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0423
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.1023
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G07300 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
AT3G18860 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0162
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1901
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G24090 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0960
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT5G41010 | Predictedinteraction predictiontwo hybridtwo hybridinterologs mappingAffinity Capture-MSAffinity Capture-MSinterologs mappingEnriched domain pairCo-expression | FSW = 0.1318
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G51940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2061
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63670 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G19080 | PredictedColocalization | FSW = 0.0262
| Unknown | TTN10 (TITAN 10) |
AT3G12990 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | RRP45A (RIBONUCLEASE PH45A) 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT2G04630 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.2235
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G11475 | PredictedAffinity Capture-MStwo hybridEnriched domain pair | FSW = 0.2086
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G53650 | Predictedinteraction prediction | FSW = 0.0062
| Unknown | HISTONE H2B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454