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AT3G02520 - ( GRF7 (GENERAL REGULATORY FACTOR 7) protein binding / protein phosphorylated amino acid binding )

84 Proteins interacs with AT3G02520

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G71830	Experimental coimmunoprecipitation Affinity Capture-MS Affinity Capture-Western	FSW = 0.0205	Class A: plasma membrane Class B: unclear plastid endoplasmic reticulum Class D: cytosol (p = 0.67)	SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT2G42590	Experimental	FSW = 0.0766	Class A: plasma membrane Class B: plastid peroxisome nucleus cytosol Class D: cytosol (p = 0.67)	GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G35160	Experimental pull down	FSW = 0.4431	Class A: plasma membrane Class B: plastid nucleus cytosol cytoskeleton Class D: cytosol (p = 0.67)	GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G10450	Predicted Phylogenetic profile method Co-expression	FSW = 0.0644	Class C: plastid plasma membrane	GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G09000	Predicted Phylogenetic profile method	FSW = 0.2090	Class C: plastid plasma membrane	14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1)
AT3G08530	Predicted interologs mapping	FSW = 0.0132	Class C: plastid plasma membrane	CLATHRIN HEAVY CHAIN PUTATIVE
AT5G65430	Predicted Phylogenetic profile method Co-expression	FSW = 0.0493	Class C: plastid	GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G59690	Predicted Phenotypic Enhancement	FSW = 0.0971	Class C: plastid	HISTONE H4
AT5G43530	Predicted Phenotypic Suppression	FSW = 0.0288	Class C: plastid	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G80070	Predicted two hybrid	FSW = 0.0077	Class C: plastid	SUS2 (ABNORMAL SUSPENSOR 2)
AT5G63110	Predicted Affinity Capture-Western Synthetic Rescue	FSW = 0.0427	Class C: plastid	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G58230	Predicted Phenotypic Enhancement	FSW = 0.0593	Class C: plastid	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT2G35040	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0360	Class C: plastid	AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN
AT1G78300	Predicted Phylogenetic profile method Co-expression	FSW = 0.0566	Class C: plasma membrane	GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G12360	Predicted Dosage Growth Defect	FSW = 0.0616	Class C: plasma membrane	KEU (KEULE) PROTEIN TRANSPORTER
AT1G16920	Predicted Dosage Growth Defect	FSW = 0.0288	Class C: plasma membrane	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT5G38480	Predicted Phenotypic Enhancement Synthetic Lethality Synthetic Lethality Synthetic Lethality Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid synthetic growth defect Synthetic Lethality Phenotypic Enhancement Phylogenetic profile method Co-expression	FSW = 0.4892	Class C: plasma membrane	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G12110	Predicted Dosage Growth Defect	FSW = 0.0418	Class C: plasma membrane	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G23630	Predicted Phenotypic Enhancement	FSW = 0.0386	Class C: plasma membrane	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT5G52640	Predicted synthetic growth defect	FSW = 0.0308	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G34580	Predicted Dosage Growth Defect	FSW = 0.0484	Class C: plasma membrane	COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G16050	Predicted Phylogenetic profile method Co-expression	FSW = 0.2464	Class C: plasma membrane	GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G22300	Predicted Phylogenetic profile method Co-expression	FSW = 0.1045	Class C: plasma membrane	GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G09900	Predicted Dosage Growth Defect	FSW = 0.0263	Class C: plasma membrane	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G65040	Predicted Affinity Capture-MS	FSW = 0.0128	Class C: plasma membrane	PROTEIN BINDING / ZINC ION BINDING
AT5G23670	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0132	Unknown	LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT4G04910	Predicted interologs mapping	FSW = 0.0142	Unknown	NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G14800	Predicted Affinity Capture-MS	FSW = 0.0064	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G06510	Predicted synthetic growth defect	FSW = 0.0236	Unknown	RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT4G01370	Predicted Phenotypic Enhancement	FSW = 0.0783	Unknown	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT5G67270	Predicted synthetic growth defect Affinity Capture-MS Phenotypic Enhancement	FSW = 0.0968	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G08720	Predicted Synthetic Lethality	FSW = 0.0258	Unknown	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE
AT2G24490	Predicted synthetic growth defect	FSW = 0.0740	Unknown	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT5G35910	Predicted Phenotypic Enhancement	FSW = 0.0711	Unknown	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT3G44530	Predicted Phenotypic Enhancement	FSW = 0.1059	Unknown	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G65470	Predicted Phenotypic Enhancement	FSW = 0.0972	Unknown	FAS1 (FASCIATA 1) HISTONE BINDING
AT2G27470	Predicted Phenotypic Suppression	FSW = 0.1189	Unknown	NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT3G20010	Predicted Phenotypic Enhancement	FSW = 0.0300	Unknown	SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT4G20400	Predicted Phenotypic Enhancement	FSW = 0.0397	Unknown	TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN
AT5G64630	Predicted Phenotypic Suppression	FSW = 0.1300	Unknown	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G06720	Predicted synthetic growth defect	FSW = 0.0082	Unknown	INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK)
AT1G07270	Predicted synthetic growth defect	FSW = 0.0236	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G51310	Predicted Phenotypic Enhancement	FSW = 0.0386	Unknown	TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G59890	Predicted Synthetic Rescue	FSW = 0.0726	Unknown	SNL5 (SIN3-LIKE 5)
AT1G67320	Predicted synthetic growth defect	FSW = 0.0427	Unknown	DNA PRIMASE LARGE SUBUNIT FAMILY
AT1G04160	Predicted Dosage Growth Defect	FSW = 0.0646	Unknown	XIB (MYOSIN XI B) MOTOR
AT1G05910	Predicted Phenotypic Enhancement	FSW = 0.0978	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0833	Unknown	AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G09020	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0479	Unknown	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR
AT1G15780	Predicted Phenotypic Suppression	FSW = 0.0372	Unknown	UNKNOWN PROTEIN
AT1G29990	Predicted Phenotypic Enhancement	FSW = 0.0940	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G31970	Predicted Affinity Capture-MS	FSW = 0.0240	Unknown	STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G32130	Predicted Phenotypic Suppression	FSW = 0.0714	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G54390	Predicted Synthetic Lethality	FSW = 0.0908	Unknown	PHD FINGER PROTEIN-RELATED
AT1G67500	Predicted Phenotypic Enhancement	FSW = 0.0367	Unknown	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G79890	Predicted Phenotypic Suppression	FSW = 0.1277	Unknown	HELICASE-RELATED
AT2G39840	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0207	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G01090	Predicted Affinity Capture-MS	FSW = 0.0539	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G06670	Predicted Phenotypic Suppression	FSW = 0.0285	Unknown	BINDING
AT3G22480	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0559	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G56640	Predicted Dosage Growth Defect	FSW = 0.0573	Unknown	EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT4G11920	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0182	Unknown	CCS52A2 SIGNAL TRANSDUCER
AT4G14160	Predicted Dosage Growth Defect	FSW = 0.0258	Unknown	TRANSPORT PROTEIN PUTATIVE
AT4G27180	Predicted Synthetic Lethality	FSW = 0.0920	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G34450	Predicted Dosage Growth Defect	FSW = 0.0085	Unknown	COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE
AT5G09350	Predicted Affinity Capture-Western two hybrid Affinity Capture-MS co-fractionation Co-fractionation Dosage Growth Defect Reconstituted Complex	FSW = 0.0766	Unknown	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09740	Predicted Affinity Capture-Western Synthetic Lethality synthetic growth defect	FSW = 0.0841	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10390	Predicted Protein-peptide	FSW = 0.1398	Unknown	HISTONE H3
AT5G10400	Predicted Protein-peptide	FSW = 0.1145	Unknown	HISTONE H3
AT5G22010	Predicted Phenotypic Enhancement	FSW = 0.0175	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G23290	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0676	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G35980	Predicted Affinity Capture-Western	FSW = 0.0258	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT5G41880	Predicted Phenotypic Enhancement	FSW = 0.0880	Unknown	POLA3 DNA PRIMASE
AT5G42000	Predicted Phenotypic Enhancement	FSW = 0.0533	Unknown	ORMDL FAMILY PROTEIN
AT5G42190	Predicted Affinity Capture-MS	FSW = 0.0085	Unknown	ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G45600	Predicted Phenotypic Enhancement	FSW = 0.1240	Unknown	GAS41 PROTEIN BINDING
AT5G49510	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0746	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G63610	Predicted Phenotypic Enhancement	FSW = 0.0531	Unknown	CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G17660	Predicted Affinity Capture-MS	FSW = 0.0115	Unknown	AGD15 (ARF-GAP DOMAIN 15) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G07760	Predicted Affinity Capture-MS	FSW = 0.0313	Unknown	FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN
AT5G67100	Predicted synthetic growth defect	FSW = 0.0240	Unknown	ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE
AT1G26480	Predicted Phylogenetic profile method Co-expression	FSW = 0.1724	Unknown	GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G78220	Predicted Phylogenetic profile method Co-expression	FSW = 0.2555	Unknown	GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G34760	Predicted Phylogenetic profile method Co-expression	FSW = 0.1916	Unknown	GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT3G02520 - ( GRF7 (GENERAL REGULATORY FACTOR 7) protein binding / protein phosphorylated amino acid binding )

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