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AT3G11730 - ( ATFP8 GTP binding / GTP-dependent protein binding / myosin XI tail binding )

77 Proteins interacs with AT3G11730

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G43900	Experimental pull down two hybrid Reconstituted Complex in vitro	FSW = 0.0405	Class B: plasma membrane peroxisome nucleus cytoskeleton Class D: nucleus (p = 0.78) extracellular (p = 0.86)	MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT5G02500	Predicted Affinity Capture-MS	FSW = 0.0093	Class C: plasma membrane	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.0100	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT4G17530	Predicted Phylogenetic profile method Co-expression	FSW = 0.6495	Class C: plasma membrane	ATRAB1C GTP BINDING
AT5G45750	Predicted Phylogenetic profile method Co-expression	FSW = 0.6420	Class C: plasma membrane	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G02130	Predicted Phylogenetic profile method Co-expression	FSW = 0.3792	Class C: plasma membrane	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT5G12010	Predicted Affinity Capture-MS	FSW = 0.0071	Class C: plasma membrane	UNKNOWN PROTEIN
AT5G47520	Predicted Phylogenetic profile method	FSW = 0.5632	Class C: plasma membrane	ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT3G46060	Predicted Phylogenetic profile method	FSW = 0.5858	Class C: plasma membrane	ATRAB8A GTP BINDING
AT1G16920	Predicted Phylogenetic profile method	FSW = 0.4415	Class C: plasma membrane	ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT3G55810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0306	Class C: plasma membrane	PYRUVATE KINASE PUTATIVE
AT5G47200	Predicted Phylogenetic profile method Co-expression	FSW = 0.6076	Class C: plasma membrane	ATRAB1A GTP BINDING
AT1G43890	Predicted Phylogenetic profile method Co-expression	FSW = 0.6381	Class C: plasma membrane	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT5G12350	Predicted Affinity Capture-MS	FSW = 0.0078	Class C: plasma membrane	RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT2G43130	Predicted Phylogenetic profile method	FSW = 0.6026	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G22780	Predicted Affinity Capture-MS	FSW = 0.0165	Class C: plasma membrane	ADAPTIN FAMILY PROTEIN
AT2G47160	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0232	Class C: plasma membrane	BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT1G59740	Predicted Affinity Capture-MS	FSW = 0.0101	Class C: plasma membrane	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G46900	Predicted Affinity Capture-MS	FSW = 0.0154	Class C: plasma membrane	COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G53610	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5414	Class C: plasma membrane	ATRAB8 GTP BINDING
AT3G09900	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.3205	Class C: plasma membrane	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G09630	Predicted Phylogenetic profile method	FSW = 0.5684	Class C: plasma membrane	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT3G07410	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6145	Class C: plasma membrane	ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G28550	Predicted Phylogenetic profile method	FSW = 0.5432	Class C: plasma membrane	ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840	Predicted Phylogenetic profile method	FSW = 0.3073	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT3G46830	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5815	Class C: plasma membrane	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT5G59150	Predicted Phylogenetic profile method	FSW = 0.6303	Class C: plasma membrane	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT4G39990	Predicted Phylogenetic profile method	FSW = 0.6145	Class C: plasma membrane	RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT4G18430	Predicted Phylogenetic profile method	FSW = 0.4745	Class C: plasma membrane	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT1G06400	Predicted Phylogenetic profile method	FSW = 0.4663	Class C: plasma membrane	ARA-2 GTP BINDING
AT1G07410	Predicted Phylogenetic profile method	FSW = 0.5656	Class C: plasma membrane	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G18800	Predicted Phylogenetic profile method	FSW = 0.3152	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G65270	Predicted Phylogenetic profile method	FSW = 0.5729	Class C: plasma membrane	ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT1G73640	Predicted Phylogenetic profile method	FSW = 0.6184	Class C: plasma membrane	ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT3G62870	Predicted synthetic growth defect	FSW = 0.0144	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G09720	Predicted Phylogenetic profile method	FSW = 0.1608	Unknown	RAS-RELATED GTP-BINDING PROTEIN PUTATIVE
AT5G26030	Predicted Affinity Capture-MS	FSW = 0.0124	Unknown	FC1 (FERROCHELATASE 1) FERROCHELATASE
AT2G39290	Predicted Affinity Capture-MS	FSW = 0.0049	Unknown	PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT1G21640	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT5G25400	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0402	Unknown	PHOSPHATE TRANSLOCATOR-RELATED
AT1G10070	Predicted Affinity Capture-MS	FSW = 0.0378	Unknown	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.5782	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT1G18870	Predicted Affinity Capture-MS	FSW = 0.0153	Unknown	ICS2 (ISOCHORISMATE SYNTHASE 2) ISOCHORISMATE SYNTHASE
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.0438	Unknown	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G27720	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0406	Unknown	EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G72560	Predicted Affinity Capture-MS	FSW = 0.0161	Unknown	PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING
AT1G01200	Predicted Phylogenetic profile method Co-expression	FSW = 0.6265	Unknown	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT5G47630	Predicted Affinity Capture-MS	FSW = 0.0214	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT2G22290	Predicted Phylogenetic profile method	FSW = 0.1291	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G03520	Predicted Phylogenetic profile method Co-expression	FSW = 0.4580	Unknown	ATRAB8C GTP BINDING
AT4G31470	Predicted Affinity Capture-MS	FSW = 0.0185	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G54840	Predicted Phylogenetic profile method	FSW = 0.1176	Unknown	ARA6 GTP BINDING / GTPASE
AT3G08730	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G05170	Predicted Affinity Capture-MS	FSW = 0.0045	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT4G29430	Predicted two hybrid Reconstituted Complex	FSW = 0.0059	Unknown	RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G79210	Predicted Affinity Capture-MS	FSW = 0.0092	Unknown	20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT2G33560	Predicted Affinity Capture-MS	FSW = 0.0281	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT1G26140	Predicted Affinity Capture-MS	FSW = 0.0402	Unknown	UNKNOWN PROTEIN
AT1G47830	Predicted Affinity Capture-MS	FSW = 0.0244	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G63660	Predicted Affinity Capture-MS	FSW = 0.0264	Unknown	GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT2G03890	Predicted Affinity Capture-MS	FSW = 0.0182	Unknown	PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT2G43360	Predicted Affinity Capture-MS	FSW = 0.0130	Unknown	BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT3G05960	Predicted Affinity Capture-MS	FSW = 0.0033	Unknown	STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G04695	Predicted Affinity Capture-MS	FSW = 0.0111	Unknown	CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G14670	Predicted Affinity Capture-MS	FSW = 0.0908	Unknown	CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G33070	Predicted Affinity Capture-MS	FSW = 0.0073	Unknown	PYRUVATE DECARBOXYLASE PUTATIVE
AT4G36630	Predicted Affinity Capture-MS	FSW = 0.0251	Unknown	EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR
AT5G03530	Predicted Phylogenetic profile method Co-expression	FSW = 0.6495	Unknown	RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT3G12160	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5642	Unknown	RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING
AT4G17160	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6190	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT3G09910	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4707	Unknown	ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT3G15060	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5527	Unknown	ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT5G47960	Predicted Phylogenetic profile method	FSW = 0.5527	Unknown	ATRABA4C GTP BINDING
AT2G31680	Predicted Phylogenetic profile method	FSW = 0.5790	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT2G33870	Predicted Phylogenetic profile method	FSW = 0.5527	Unknown	ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT5G60860	Predicted Phylogenetic profile method	FSW = 0.5527	Unknown	ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT4G39890	Predicted Phylogenetic profile method	FSW = 0.3636	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G11730 - ( ATFP8 GTP binding / GTP-dependent protein binding / myosin XI tail binding )

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