Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G13580 - ( 60S ribosomal protein L7 (RPL7D) )
108 Proteins interacs with AT3G13580Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G09570 | Experimentaltwo hybrid | FSW = 0.0079
| Class B:plastidnucleuscytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
AT2G44120 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0324
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7C) |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.2977
| Class C:plastid | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G18020 | PredictedAffinity Capture-MS | FSW = 0.5336
| Class C:plastid | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.3371
| Class C:plastid | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.4322
| Class C:plastid | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G42740 | PredictedAffinity Capture-MS | FSW = 0.4622
| Class C:plastid | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.2576
| Class C:plastid | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G01250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1757
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G47610 | PredictedAffinity Capture-MS | FSW = 0.4901
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.3290
| Class C:plastid | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20290 | PredictedAffinity Capture-MS | FSW = 0.3212
| Class C:plastid | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT2G09990 | PredictedAffinity Capture-MS | FSW = 0.3927
| Class C:plastid | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0522
| Class C:plastid | HISTONE H4 |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.0064
| Class C:plastid | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT3G04920 | PredictedAffinity Capture-MS | FSW = 0.3771
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.4420
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.4787
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.3156
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2714
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT1G07770 | PredictedAffinity Capture-MS | FSW = 0.3858
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G34480 | PredictedAffinity Capture-MS | FSW = 0.3279
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT4G38920 | Predictedtwo hybrid | FSW = 0.0096
| Unknown | ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) ATPASE |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.4914
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT5G22440 | PredictedAffinity Capture-MS | FSW = 0.5270
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT3G01610 | PredictedAffinity Capture-MS | FSW = 0.2290
| Unknown | CDC48C ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G11510 | PredictedAffinity Capture-MS | FSW = 0.4021
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT5G39740 | PredictedAffinity Capture-MS | FSW = 0.4886
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT2G27710 | PredictedAffinity Capture-MS | FSW = 0.3299
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT1G71860 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.2569
| Unknown | RNA BINDING |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.4009
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.3420
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.3514
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0201
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.4952
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.5072
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G76810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2279
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.3243
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.3933
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT1G77840 | PredictedAffinity Capture-MS | FSW = 0.1328
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.4154
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.2962
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G80750 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0316
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7A) |
AT5G06260 | Predictedtwo hybridtwo hybrid | FSW = 0.0096
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.3593
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G25630 | PredictedAffinity Capture-MS | FSW = 0.2427
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT3G58660 | PredictedAffinity Capture-MS | FSW = 0.4046
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT3G23620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2840
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G57150 | PredictedAffinity Capture-MS | FSW = 0.1773
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.5552
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT3G53020 | PredictedAffinity Capture-MS | FSW = 0.2513
| Unknown | STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G58420 | PredictedAffinity Capture-MS | FSW = 0.4687
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT1G72440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4163
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
AT3G16810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3988
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G55920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3280
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2615
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G26910 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT5G65750 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT3G08730 | Predictedtwo hybrid | FSW = 0.0081
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G34270 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G17620 | PredictedAffinity Capture-MS | FSW = 0.2169
| Unknown | GLYCINE-RICH PROTEIN |
AT5G59240 | PredictedAffinity Capture-MS | FSW = 0.3948
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
AT1G10490 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2521
| Unknown | UNKNOWN PROTEIN |
AT5G03730 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT1G50920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4015
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.6234
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.2591
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.3898
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0499
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT4G38630 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0257
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G37590 | Predictedtwo hybrid | FSW = 0.0085
| Unknown | BINDING |
AT1G52920 | Predictedtwo hybridtwo hybrid | FSW = 0.0292
| Unknown | GPCR (G PROTEIN COUPLED RECEPTOR) ABSCISIC ACID BINDING / CATALYTIC |
AT5G65280 | Predictedtwo hybrid | FSW = 0.0194
| Unknown | GCL1 (GCR2-LIKE 1) CATALYTIC |
AT1G16350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0651
| Unknown | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE |
AT1G79150 | PredictedAffinity Capture-MS | FSW = 0.2601
| Unknown | BINDING |
AT2G18220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2867
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.1619
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G10170 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G13160 | PredictedAffinity Capture-MS | FSW = 0.1938
| Unknown | SDA1 FAMILY PROTEIN |
AT1G18830 | PredictedAffinity Capture-MS | FSW = 0.0453
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.1715
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G52980 | PredictedAffinity Capture-MS | FSW = 0.1772
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G80410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0101
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G21440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3058
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.2281
| Unknown | BINDING |
AT2G36930 | PredictedAffinity Capture-MS | FSW = 0.1587
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0607
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G15460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3638
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G16840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2096
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.5513
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.4558
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.5710
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G01560 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2714
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G11820 | PredictedAffinity Capture-MS | FSW = 0.0934
| Unknown | MVA1 ACETYL-COA C-ACETYLTRANSFERASE/ HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
AT4G14160 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G15770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2398
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G16630 | PredictedAffinity Capture-MS | FSW = 0.3012
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH28) |
AT4G19210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1925
| Unknown | ATRLI2 TRANSPORTER |
AT5G05450 | PredictedAffinity Capture-MS | FSW = 0.3350
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH18) |
AT5G08420 | PredictedAffinity Capture-MS | FSW = 0.1568
| Unknown | RNA BINDING |
AT5G14520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3157
| Unknown | PESCADILLO-RELATED |
AT5G46190 | PredictedAffinity Capture-MS | FSW = 0.0634
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
AT5G46840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2758
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G65900 | PredictedAffinity Capture-MS | FSW = 0.4484
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454