Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G00520 - ( acyl-CoA thioesterase family protein )

38 Proteins interacs with AT4G00520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G48170

Predicted

Affinity Capture-MS

FSW = 0.0053

Class C:

peroxisome

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G63400

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G19640

Predicted

two hybrid

FSW = 0.0171

Unknown

ARA7 GTP BINDING
AT5G55630

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2500

Unknown

ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL
AT5G26030

Predicted

Affinity Capture-MS

FSW = 0.0138

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT3G59280

Predicted

Phenotypic Suppression

FSW = 0.1267

Unknown

TXR1 (THAXTOMIN A RESISTANT 1)
AT2G04940

Predicted

two hybrid

FSW = 0.0464

Unknown

SCRAMBLASE-RELATED
AT3G19980

Predicted

Affinity Capture-MS

FSW = 0.0498

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G65430

Predicted

Affinity Capture-MS

FSW = 0.0403

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G16950

Predicted

Affinity Capture-MS

FSW = 0.0707

Unknown

LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE
AT3G19160

Predicted

Affinity Capture-MS

FSW = 0.0346

Unknown

ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT5G62880

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1287

Unknown

ARAC10 GTP BINDING
AT3G13560

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1688

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT5G23900

Predicted

Affinity Capture-MS

FSW = 0.0284

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G53750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0808

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT2G36380

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2755

Unknown

PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G43370

Predicted

Affinity Capture-MS

FSW = 0.0703

Unknown

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.1557

Unknown

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G07470

Predicted

synthetic growth defect

FSW = 0.0583

Unknown

TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G02680

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0728

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G30990

Predicted

Affinity Capture-MS

FSW = 0.0807

Unknown

BINDING
AT3G54300

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT4G10920

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1340

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT4G21710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0102

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G18100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

FSW = 0.1570

Unknown

E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT3G54820

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.2874

Unknown

PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT4G29430

Predicted

co-fractionation

Co-fractionation

Affinity Capture-MS

FSW = 0.2251

Unknown

RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G19730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.0925

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G20920

Predicted

Affinity Capture-MS

FSW = 0.1176

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G63370

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1822

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G64480

Predicted

Affinity Capture-MS

FSW = 0.0509

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT1G80460

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2600

Unknown

NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT1G05830

Predicted

two hybrid

FSW = 0.0159

Unknown

ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC)
AT1G25510

Predicted

Affinity Capture-MS

FSW = 0.0093

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0304

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT5G38890

Predicted

Affinity Capture-MS

FSW = 0.0133

Unknown

EXORIBONUCLEASE-RELATED
AT5G20560

Predicted

Affinity Capture-MS

FSW = 0.0835

Unknown

BETA-13-GLUCANASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454