Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G00520 - ( acyl-CoA thioesterase family protein )
38 Proteins interacs with AT4G00520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48170 | PredictedAffinity Capture-MS | FSW = 0.0053
| Class C:peroxisome | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT4G19640 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | ARA7 GTP BINDING |
AT5G55630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2500
| Unknown | ATKCO1 CALCIUM-ACTIVATED POTASSIUM CHANNEL/ ION CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT3G59280 | PredictedPhenotypic Suppression | FSW = 0.1267
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
AT2G04940 | Predictedtwo hybrid | FSW = 0.0464
| Unknown | SCRAMBLASE-RELATED |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.0498
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G65430 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0707
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT5G62880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1287
| Unknown | ARAC10 GTP BINDING |
AT3G13560 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1688
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0808
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT2G36380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2755
| Unknown | PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.0703
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1557
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G07470 | Predictedsynthetic growth defect | FSW = 0.0583
| Unknown | TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE |
AT1G02680 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0728
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.0807
| Unknown | BINDING |
AT3G54300 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT4G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1340
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G21710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0102
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G18100 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppression | FSW = 0.1570
| Unknown | E12A11 PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G54820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.2874
| Unknown | PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL |
AT4G29430 | Predictedco-fractionationCo-fractionationAffinity Capture-MS | FSW = 0.2251
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G19730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0925
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.1176
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G63370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1822
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G80460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2600
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G25510 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0835
| Unknown | BETA-13-GLUCANASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454