Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G26230 - ( 60S ribosomal protein L31 (RPL31B) )
103 Proteins interacs with AT4G26230Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-Western | FSW = 0.0365
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT4G32470 | PredictedAffinity Capture-MS | FSW = 0.4064
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.0642
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.0478
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G62150 | PredictedAffinity Capture-MS | FSW = 0.1282
| Unknown | PGP21 (P-GLYCOPROTEIN 21) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G22780 | PredictedAffinity Capture-MS | FSW = 0.3494
| Unknown | PFL (POINTED FIRST LEAVES) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G54270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0556
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.3651
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0970
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.3994
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3630
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.2911
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.3699
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.3587
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0362
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G13050 | PredictedAffinity Capture-MS | FSW = 0.3584
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.2438
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0598
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.2813
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G45420 | PredictedAffinity Capture-MS | FSW = 0.2764
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G23740 | PredictedAffinity Capture-MS | FSW = 0.3236
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G34670 | PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0853
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0117
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.3746
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G14290 | PredictedCo-purificationAffinity Capture-WesternReconstituted ComplexCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexCo-purificationSynthetic Rescue | FSW = 0.0302
| Unknown | LOCATED IN PLASMA MEMBRANE EXPRESSED IN 14 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ALPHA/BETA HYDROLASE FOLD-1 (INTERPROIPR000073) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G235401) HAS 2977 BLAST HITS TO 1894 PROTEINS IN 536 SPECIES ARCHAE - 16 BACTERIA - 950 METAZOA - 424 FUNGI - 111 PLANTS - 88 VIRUSES - 19 OTHER EUKARYOTES - 1369 (SOURCE NCBI BLINK) |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0975
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G70600 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4050
| Unknown | ZINC ION BINDING |
AT4G15000 | PredictedAffinity Capture-MS | FSW = 0.0390
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G19740 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0347
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31A) |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.3201
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G35690 | PredictedAffinity Capture-MS | FSW = 0.2864
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G02670 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0306
| Unknown | DNA REPAIR PROTEIN PUTATIVE |
AT5G59870 | PredictedAffinity Capture-MS | FSW = 0.3833
| Unknown | HTA6 DNA BINDING |
AT5G44500 | PredictedAffinity Capture-MS | FSW = 0.3281
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT2G19385 | PredictedAffinity Capture-MS | FSW = 0.0287
| Unknown | ZINC ION BINDING |
AT3G20970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0922
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0578
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.2864
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.4195
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.2660
| Unknown | BINDING |
AT2G14580 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | ATPRB1 |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.1255
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.0369
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.4217
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT2G24040 | PredictedAffinity Capture-MS | FSW = 0.3575
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.0569
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G56710 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0948
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT2G29540 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.1073
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G66740 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | SGA2 |
AT4G34910 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH16) |
AT4G36020 | PredictedAffinity Capture-MS | FSW = 0.0069
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT1G33090 | PredictedAffinity Capture-MS | FSW = 0.0796
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G51770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4042
| Unknown | UNKNOWN PROTEIN |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.3685
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.3485
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G19750 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30A) |
AT2G36190 | Predictedtwo hybrid | FSW = 0.0481
| Unknown | ATCWINV4 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 4) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.3689
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0429
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G55280 | PredictedAffinity Capture-MS | FSW = 0.0724
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G09150 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | T-COMPLEX PROTEIN 11 |
AT4G22753 | PredictedAffinity Capture-MS | FSW = 0.0655
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.2972
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT1G11530 | PredictedAffinity Capture-MS | FSW = 0.3732
| Unknown | ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1) PROTEIN DISULFIDE ISOMERASE |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.2844
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25260 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0562
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G56090 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G63660 | PredictedAffinity Capture-MS | FSW = 0.1022
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.3891
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.1700
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G31260 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G32160 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G35390 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.1317
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G12760 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0135
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK) |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.3049
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.3152
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G23390 | PredictedAffinity Capture-MS | FSW = 0.0738
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2805
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G43250 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.3145
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G53510 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1894
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G17770 | PredictedAffinity Capture-MS | FSW = 0.3418
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G32350 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | UNKNOWN PROTEIN |
AT4G33070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0428
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT4G35620 | PredictedAffinity Capture-Western | FSW = 0.0805
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G19660 | PredictedAffinity Capture-MS | FSW = 0.3468
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.3017
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.1739
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G48780 | Predictedtwo hybrid | FSW = 0.0623
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT5G11010 | Predictedtwo hybridCo-expression | FSW = 0.0269
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454