Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49510 - ( PDF3 (PREFOLDIN 3) unfolded protein binding )
134 Proteins interacs with AT5G49510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.0545
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G29130 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0497
| Unknown | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G04820 | Predictedinterologs mappinginterologs mappingPhenotypic EnhancementCo-expression | FSW = 0.0537
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G07770 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0115
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G22840 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0045
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT4G01320 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0404
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G60840 | Predictedinteraction predictionSynthetic Lethality | FSW = 0.1695
| Unknown | MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4) |
AT5G19740 | PredictedPhenotypic Enhancement | FSW = 0.1351
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
AT3G22110 | PredictedPhenotypic Suppression | FSW = 0.0959
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G50460 | PredictedSynthetic Lethality | FSW = 0.0778
| Unknown | HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT4G01370 | PredictedPhenotypic Suppression | FSW = 0.0251
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT3G02520 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0746
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.1339
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT5G58230 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0321
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT1G71440 | Predictedinteraction predictionSynthetic LethalityCo-expression | FSW = 0.1841
| Unknown | PFI (PFIFFERLING) |
AT4G38740 | PredictedPhenotypic Enhancement | FSW = 0.0445
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0085
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G09840 | PredictedAffinity Capture-MS | FSW = 0.0096
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT1G35160 | PredictedSynthetic Lethality | FSW = 0.0402
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G14120 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0293
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT3G61650 | PredictedSynthetic LethalityAffinity Capture-Westerninteraction prediction | FSW = 0.0852
| Unknown | TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT3G12110 | PredictedPhenotypic Enhancement | FSW = 0.0414
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G59820 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0160
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G23630 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0795
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G13210 | PredictedSynthetic Lethality | FSW = 0.0137
| Unknown | ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING |
AT1G73180 | PredictedSynthetic Lethality | FSW = 0.0177
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED |
AT1G10900 | PredictedSynthetic Lethality | FSW = 0.0246
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G05190 | PredictedSynthetic LethalityCo-expression | FSW = 0.2170
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.3148
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G38810 | Predictedinteraction predictionCo-expression | FSW = 0.1283
| Unknown | HTA8 (HISTONE H2A 8) DNA BINDING |
AT3G12810 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.2127
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G44530 | PredictedPhenotypic Enhancement | FSW = 0.0550
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G02740 | PredictedSynthetic Lethality | FSW = 0.1340
| Unknown | CHROMATIN BINDING |
AT1G05120 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0409
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G35670 | PredictedPhenotypic Suppression | FSW = 0.1617
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT1G07370 | PredictedPhenotypic Suppression | FSW = 0.1466
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0552
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G36740 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1899
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.0963
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT5G18620 | PredictedPhenotypic Enhancement | FSW = 0.0369
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT2G44950 | PredictedPhenotypic Suppression | FSW = 0.1662
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G72330 | PredictedSynthetic Lethality | FSW = 0.0373
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G17910 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0268
| Unknown | SURF1 (SURFEIT 1) |
AT3G14270 | Predictedinteraction prediction | FSW = 0.0383
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G14690 | PredictedSynthetic Lethality | FSW = 0.1462
| Unknown | MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7) |
AT3G47690 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2422
| Unknown | ATEB1A MICROTUBULE BINDING |
AT1G57550 | PredictedSynthetic Lethality | FSW = 0.0523
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT5G57450 | PredictedPhenotypic Suppression | FSW = 0.0682
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT3G25980 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.1323
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G22310 | PredictedPhenotypic Enhancement | FSW = 0.0309
| Unknown | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE |
AT5G03340 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0094
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT2G36200 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2477
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G55325 | Predictedtwo hybrid | FSW = 0.0167
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAP240 (INTERPROIPR009401) HAS 190 BLAST HITS TO 182 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 45 METAZOA - 113 FUNGI - 3 PLANTS - 23 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT4G38630 | Predictedtwo hybridtwo hybridPhenotypic SuppressionCo-expression | FSW = 0.1211
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G37290 | Predictedtwo hybridtwo hybrid | FSW = 0.0078
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT1G04730 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementCo-expression | FSW = 0.2198
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninterologs mappingCo-expression | FSW = 0.6543
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G16560 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0271
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G20610 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0468
| Unknown | CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G23260 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0784
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G29150 | PredictedPhenotypic Suppression | FSW = 0.0975
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G29990 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.6094
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G34150 | PredictedPhenotypic Suppression | FSW = 0.0938
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G52740 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2054
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G55915 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0776
| Unknown | ZINC ION BINDING |
AT1G61040 | PredictedPhenotypic Suppression | FSW = 0.0993
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G71790 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0383
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT1G79890 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1824
| Unknown | HELICASE-RELATED |
AT2G02760 | PredictedPhenotypic Suppression | FSW = 0.1409
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G11000 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0852
| Unknown | ATMAK10 ACETYLTRANSFERASE |
AT2G22400 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0352
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN |
AT2G25530 | PredictedSynthetic Lethality | FSW = 0.0167
| Unknown | AFG1-LIKE ATPASE FAMILY PROTEIN |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0501
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G29210 | PredictedSynthetic Lethality | FSW = 0.0311
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN |
AT2G30410 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.1269
| Unknown | KIS (KIESEL) UNFOLDED PROTEIN BINDING |
AT2G32850 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0275
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G33560 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0801
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G38130 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0601
| Unknown | ATMAK3 N-ACETYLTRANSFERASE |
AT2G44580 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2199
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT2G45695 | PredictedSynthetic Lethality | FSW = 0.0549
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN RELATED MODIFIER 1 (INTERPROIPR015221) UBIQUITIN-RELATED MODIFIER 1 (INTERPROIPR017188) MOLYBDOPTERIN SYNTHASE/THIAMIN BIOSYNTHESIS SULPHUR CARRIER BETA-GRASP (INTERPROIPR016155) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G611131) HAS 238 BLAST HITS TO 238 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 72 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT3G10070 | PredictedPhenotypic Suppression | FSW = 0.0876
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT3G20800 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0739
| Unknown | RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE |
AT3G21070 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | NADK1 (NAD KINASE 1) NAD+ KINASE/ NADH KINASE/ CALMODULIN BINDING |
AT3G22142 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1854
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
AT3G22480 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.5520
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G42660 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectCo-expression | FSW = 0.2944
| Unknown | NUCLEOTIDE BINDING |
AT3G47810 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0460
| Unknown | MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G50960 | PredictedSynthetic RescueSynthetic LethalitySynthetic Rescueinteraction prediction | FSW = 0.0493
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1760
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G15475 | PredictedSynthetic Lethality | FSW = 0.0255
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G15930 | Predictedinteraction predictionSynthetic Lethality | FSW = 0.0466
| Unknown | MICROTUBULE MOTOR |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.2609
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G33240 | PredictedSynthetic Lethality | FSW = 0.1739
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT4G35620 | PredictedSynthetic Lethality | FSW = 0.0183
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G39050 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1427
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G06620 | PredictedSynthetic Lethality | FSW = 0.0200
| Unknown | SDG38 (SET DOMAIN PROTEIN 38) |
AT5G23290 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Suppressioninterologs mappingCo-expression | FSW = 0.5738
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45600 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3158
| Unknown | GAS41 PROTEIN BINDING |
AT1G05910 | PredictedPhenotypic Enhancement | FSW = 0.0817
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G24706 | PredictedPhenotypic Enhancement | FSW = 0.0191
| Unknown | UNKNOWN PROTEIN |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | NUCLEOTIDE BINDING |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0898
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.1536
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G02820 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1818
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G09920 | PredictedSynthetic Lethality | FSW = 0.0255
| Unknown | PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
AT3G18520 | PredictedPhenotypic Enhancement | FSW = 0.1102
| Unknown | HDA15 HISTONE DEACETYLASE |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.1581
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G26020 | PredictedPhenotypic Enhancement | FSW = 0.1615
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT3G27000 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0281
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G10260 | PredictedPhenotypic Suppression | FSW = 0.1427
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1303
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G46030 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | UNKNOWN PROTEIN |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.1218
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G55130 | PredictedSynthetic Lethalityinteraction predictionGene neighbors methodCo-expression | FSW = 0.0500
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT5G63920 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0682
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT5G65180 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1324
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT5G66100 | PredictedPhenotypic Enhancement | FSW = 0.1256
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT5G67320 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.1054
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT4G17380 | Predictedin vitroin vivo | FSW = 0.0234
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT1G16330 | PredictedSynthetic LethalityCo-expression | FSW = 0.0445
| Unknown | CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G18990 | PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0767
| Unknown | TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) |
AT3G26990 | PredictedSynthetic Lethality | FSW = 0.0426
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT4G28070 | PredictedSynthetic Lethality | FSW = 0.0163
| Unknown | AFG1-LIKE ATPASE FAMILY PROTEIN |
AT1G71010 | PredictedSynthetic Lethality | FSW = 0.0862
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G48510 | PredictedSynthetic Lethality | FSW = 0.0576
| Unknown | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN SURFEIT-RELATED |
AT5G27400 | PredictedSynthetic Lethality | FSW = 0.0326
| Unknown | UNKNOWN PROTEIN |
AT5G01720 | PredictedSynthetic Lethality | FSW = 0.0262
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT2G18000 | PredictedSynthetic Lethality | FSW = 0.1522
| Unknown | TAF14 (TBP-ASSOCIATED FACTOR 14) |
AT5G54670 | Predictedinteraction prediction | FSW = 0.1843
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT2G38905 | Predictedinteraction prediction | FSW = 0.0689
| Unknown | HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE |
AT4G30490 | Predictedinteraction prediction | FSW = 0.0290
| Unknown | AFG1-LIKE ATPASE FAMILY PROTEIN |
AT4G37280 | Predictedinteraction prediction | FSW = 0.0511
| Unknown | MRG FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454