Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G49510 - ( PDF3 (PREFOLDIN 3) unfolded protein binding )

134 Proteins interacs with AT5G49510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

interologs mapping

interologs mapping

Phenotypic Enhancement

FSW = 0.0545

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G29130

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0497

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G04820Predicted

interologs mapping

interologs mapping

Phenotypic Enhancement

Co-expression

FSW = 0.0537

Unknown

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G07770

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0115

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G22840

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0045

Unknown

CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING
AT4G01320

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0404

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT3G60840

Predicted

interaction prediction

Synthetic Lethality

FSW = 0.1695

Unknown

MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)
AT5G19740

Predicted

Phenotypic Enhancement

FSW = 0.1351

Unknown

PEPTIDASE M28 FAMILY PROTEIN
AT3G22110

Predicted

Phenotypic Suppression

FSW = 0.0959

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G50460

Predicted

Synthetic Lethality

FSW = 0.0778

Unknown

HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT4G01370

Predicted

Phenotypic Suppression

FSW = 0.0251

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT3G02520

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0746

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.1339

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G58230

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0321

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT1G71440

Predicted

interaction prediction

Synthetic Lethality

Co-expression

FSW = 0.1841

Unknown

PFI (PFIFFERLING)
AT4G38740

Predicted

Phenotypic Enhancement

FSW = 0.0445

Unknown

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G60390

Predicted

two hybrid

FSW = 0.0082

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07940Predicted

two hybrid

two hybrid

FSW = 0.0085

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G09840

Predicted

Affinity Capture-MS

FSW = 0.0096

Unknown

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT1G35160

Predicted

Synthetic Lethality

FSW = 0.0402

Unknown

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G14120

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0293

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT3G61650

Predicted

Synthetic Lethality

Affinity Capture-Western

interaction prediction

FSW = 0.0852

Unknown

TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT3G12110

Predicted

Phenotypic Enhancement

FSW = 0.0414

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G59820

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0160

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT5G23630

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0795

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G13210

Predicted

Synthetic Lethality

FSW = 0.0137

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT1G73180

Predicted

Synthetic Lethality

FSW = 0.0177

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT1G10900

Predicted

Synthetic Lethality

FSW = 0.0246

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT4G05190

Predicted

Synthetic Lethality

Co-expression

FSW = 0.2170

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT5G67270

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.3148

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G38810

Predicted

interaction prediction

Co-expression

FSW = 0.1283

Unknown

HTA8 (HISTONE H2A 8) DNA BINDING
AT3G12810

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.2127

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G44530

Predicted

Phenotypic Enhancement

FSW = 0.0550

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G02740

Predicted

Synthetic Lethality

FSW = 0.1340

Unknown

CHROMATIN BINDING
AT1G05120

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0409

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G35670

Predicted

Phenotypic Suppression

FSW = 0.1617

Unknown

FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT1G07370

Predicted

Phenotypic Suppression

FSW = 0.1466

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0552

Unknown

FZF TRANSCRIPTION FACTOR
AT2G36740

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1899

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.0963

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G18620

Predicted

Phenotypic Enhancement

FSW = 0.0369

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT2G44950

Predicted

Phenotypic Suppression

FSW = 0.1662

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G72330

Predicted

Synthetic Lethality

FSW = 0.0373

Unknown

ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G17910

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0268

Unknown

SURF1 (SURFEIT 1)
AT3G14270

Predicted

interaction prediction

FSW = 0.0383

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G14690

Predicted

Synthetic Lethality

FSW = 0.1462

Unknown

MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)
AT3G47690

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2422

Unknown

ATEB1A MICROTUBULE BINDING
AT1G57550

Predicted

Synthetic Lethality

FSW = 0.0523

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT5G57450

Predicted

Phenotypic Suppression

FSW = 0.0682

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT3G25980

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.1323

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G22310

Predicted

Phenotypic Enhancement

FSW = 0.0309

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT5G03340

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0094

Unknown

CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE
AT2G36200

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

FSW = 0.2477

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT1G55325

Predicted

two hybrid

FSW = 0.0167

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAP240 (INTERPROIPR009401) HAS 190 BLAST HITS TO 182 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 45 METAZOA - 113 FUNGI - 3 PLANTS - 23 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G38630

Predicted

two hybrid

two hybrid

Phenotypic Suppression

Co-expression

FSW = 0.1211

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G37290

Predicted

two hybrid

two hybrid

FSW = 0.0078

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT1G04730Predicted

interaction prediction

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

Co-expression

FSW = 0.2198

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G08780

Predicted

interaction prediction

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

Co-expression

FSW = 0.6543

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G16560

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0271

Unknown

PER1-LIKE FAMILY PROTEIN
AT1G20610

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0468

Unknown

CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G23260

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0784

Unknown

MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G29150

Predicted

Phenotypic Suppression

FSW = 0.0975

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G29990

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.6094

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.0938

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2054

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G55915

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0776

Unknown

ZINC ION BINDING
AT1G61040

Predicted

Phenotypic Suppression

FSW = 0.0993

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G71790

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0383

Unknown

F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G79890

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1824

Unknown

HELICASE-RELATED
AT2G02760

Predicted

Phenotypic Suppression

FSW = 0.1409

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G11000

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0852

Unknown

ATMAK10 ACETYLTRANSFERASE
AT2G22400

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0352

Unknown

NOL1/NOP2/SUN FAMILY PROTEIN
AT2G25530

Predicted

Synthetic Lethality

FSW = 0.0167

Unknown

AFG1-LIKE ATPASE FAMILY PROTEIN
AT2G27970

Predicted

Phenotypic Enhancement

FSW = 0.0501

Unknown

CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G29210

Predicted

Synthetic Lethality

FSW = 0.0311

Unknown

SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN
AT2G30410

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

interologs mapping

Phenotypic Enhancement

FSW = 0.1269

Unknown

KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT2G32850

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0275

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G33560

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0801

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G38130

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0601

Unknown

ATMAK3 N-ACETYLTRANSFERASE
AT2G44580

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.2199

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G45695

Predicted

Synthetic Lethality

FSW = 0.0549

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN RELATED MODIFIER 1 (INTERPROIPR015221) UBIQUITIN-RELATED MODIFIER 1 (INTERPROIPR017188) MOLYBDOPTERIN SYNTHASE/THIAMIN BIOSYNTHESIS SULPHUR CARRIER BETA-GRASP (INTERPROIPR016155) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G611131) HAS 238 BLAST HITS TO 238 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 72 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G10070

Predicted

Phenotypic Suppression

FSW = 0.0876

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G20800

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0739

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G21070

Predicted

Synthetic Lethality

FSW = 0.0186

Unknown

NADK1 (NAD KINASE 1) NAD+ KINASE/ NADH KINASE/ CALMODULIN BINDING
AT3G22142

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1854

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.5520

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G42660

Predicted

interaction prediction

Synthetic Lethality

synthetic growth defect

Co-expression

FSW = 0.2944

Unknown

NUCLEOTIDE BINDING
AT3G47810

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0460

Unknown

MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G50960

Predicted

Synthetic Rescue

Synthetic Lethality

Synthetic Rescue

interaction prediction

FSW = 0.0493

Unknown

PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1760

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G15475

Predicted

Synthetic Lethality

FSW = 0.0255

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT4G15930

Predicted

interaction prediction

Synthetic Lethality

FSW = 0.0466

Unknown

MICROTUBULE MOTOR
AT4G27180

Predicted

Synthetic Lethality

FSW = 0.2609

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G33240

Predicted

Synthetic Lethality

FSW = 0.1739

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G35620

Predicted

Synthetic Lethality

FSW = 0.0183

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G39050

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1427

Unknown

KINESIN-RELATED PROTEIN (MKRP2)
AT5G06620

Predicted

Synthetic Lethality

FSW = 0.0200

Unknown

SDG38 (SET DOMAIN PROTEIN 38)
AT5G23290

Predicted

interaction prediction

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

Co-expression

FSW = 0.5738

Unknown

PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT5G41700

Predicted

Phenotypic Enhancement

FSW = 0.0780

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G45600

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.3158

Unknown

GAS41 PROTEIN BINDING
AT1G05910

Predicted

Phenotypic Enhancement

FSW = 0.0817

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G24706

Predicted

Phenotypic Enhancement

FSW = 0.0191

Unknown

UNKNOWN PROTEIN
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.0845

Unknown

NUCLEOTIDE BINDING
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0898

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.1536

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G02820

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.1818

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G09920

Predicted

Synthetic Lethality

FSW = 0.0255

Unknown

PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.1102

Unknown

HDA15 HISTONE DEACETYLASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1581

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.1615

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G27000

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0281

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.1427

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.1303

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G46030

Predicted

Phenotypic Enhancement

FSW = 0.0541

Unknown

UNKNOWN PROTEIN
AT5G48640

Predicted

Phenotypic Enhancement

FSW = 0.1218

Unknown

CYCLIN FAMILY PROTEIN
AT5G55130

Predicted

Synthetic Lethality

interaction prediction

Gene neighbors method

Co-expression

FSW = 0.0500

Unknown

CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT5G63920

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0682

Unknown

DNA TOPOISOMERASE III ALPHA PUTATIVE
AT5G65180

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1324

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.1256

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT5G67320

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

Co-expression

FSW = 0.1054

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT4G17380

Predicted

in vitro

in vivo

FSW = 0.0234

Unknown

MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT1G16330

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0445

Unknown

CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE
AT2G18990

Predicted

Synthetic Lethality

Synthetic Rescue

FSW = 0.0767

Unknown

TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)
AT3G26990

Predicted

Synthetic Lethality

FSW = 0.0426

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT4G28070

Predicted

Synthetic Lethality

FSW = 0.0163

Unknown

AFG1-LIKE ATPASE FAMILY PROTEIN
AT1G71010

Predicted

Synthetic Lethality

FSW = 0.0862

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G48510Predicted

Synthetic Lethality

FSW = 0.0576

Unknown

CYTOCHROME C OXIDASE ASSEMBLY PROTEIN SURFEIT-RELATED
AT5G27400

Predicted

Synthetic Lethality

FSW = 0.0326

Unknown

UNKNOWN PROTEIN
AT5G01720

Predicted

Synthetic Lethality

FSW = 0.0262

Unknown

F-BOX FAMILY PROTEIN (FBL3)
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.1522

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT5G54670

Predicted

interaction prediction

FSW = 0.1843

Unknown

ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR
AT2G38905

Predicted

interaction prediction

FSW = 0.0689

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT4G30490

Predicted

interaction prediction

FSW = 0.0290

Unknown

AFG1-LIKE ATPASE FAMILY PROTEIN
AT4G37280

Predicted

interaction prediction

FSW = 0.0511

Unknown

MRG FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454