Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G54260 - ( MRE11 (meiotic recombination 11) endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase )
112 Proteins interacs with AT5G54260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02680 | Experimentaltwo hybrid | FSW = 0.1414
| Unknown | NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) |
AT2G06510 | PredictedPhenotypic EnhancementColocalizationPhenotypic Enhancement | FSW = 0.1140
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT5G43530 | Predictedsynthetic growth defect | FSW = 0.2724
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT3G48190 | PredictedCo-purificationProtein-peptide | FSW = 0.1183
| Unknown | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT5G63110 | PredictedPhenotypic Enhancement | FSW = 0.1554
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT2G28190 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2013
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G11630 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic Lethality | FSW = 0.1771
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G12520 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3202
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G48750 | Predictedsynthetic growth defect | FSW = 0.0332
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G07670 | Predictedsynthetic growth defect | FSW = 0.0561
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0421
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G18524 | PredictedCo-purification | FSW = 0.2442
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT1G16970 | PredictedSynthetic RescuePhenotypic SuppressionPhenotypic SuppressionSynthetic Rescuein vivotwo hybridAffinity Capture-MS | FSW = 0.1399
| Unknown | KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT1G08130 | Predictedtwo hybrid | FSW = 0.1543
| Unknown | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0859
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT4G26720 | PredictedSynthetic Lethality | FSW = 0.1402
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G67270 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2058
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT1G21700 | PredictedAffinity Capture-Western | FSW = 0.0533
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT4G02070 | PredictedCo-purification | FSW = 0.2039
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT4G21010 | PredictedPhenotypic Enhancement | FSW = 0.0408
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT2G33610 | PredictedAffinity Capture-Western | FSW = 0.0229
| Unknown | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT1G51060 | PredictedPhenotypic Enhancement | FSW = 0.0194
| Unknown | HTA10 DNA BINDING |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.2893
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G26150 | Predictedsynthetic growth defect | FSW = 0.1124
| Unknown | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.3368
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G65470 | Predictedsynthetic growth defect | FSW = 0.2051
| Unknown | FAS1 (FASCIATA 1) HISTONE BINDING |
AT2G18760 | PredictedPhenotypic Suppression | FSW = 0.0345
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G38560 | PredictedPhenotypic Enhancement | FSW = 0.1755
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G43810 | Predictedsynthetic growth defect | FSW = 0.1410
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT5G64630 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1351
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G19120 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1906
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | Predictedsynthetic growth defect | FSW = 0.1692
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G44950 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2662
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G35940 | PredictedSynthetic Lethalitysynthetic growth defectsynthetic growth defectSynthetic Lethality | FSW = 0.2615
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G75510 | PredictedPhenotypic Enhancement | FSW = 0.0799
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT1G10130 | Predictedsynthetic growth defect | FSW = 0.0452
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G47690 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1353
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G41150 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2472
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31970 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridSynthetic RescueSynthetic LethalityReconstituted ComplexPhenotypic SuppressionCo-purificationColocalizationColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationColocalizationtwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternCo-purificationin vitroin vivotwo hybridin vivoin vitroCo-purificationAffinity Capture-Westernco-fractionationCo-fractionationSynthetic RescueSynthetic LethalityAffinity Capture-MSReconstituted ComplexPhenotypic Suppressioninterologs mappinginteraction prediction | FSW = 0.6582
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G66130 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2921
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G19910 | Predictedsynthetic growth defect | FSW = 0.2228
| Unknown | SOH1 FAMILY PROTEIN |
AT3G05210 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1142
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT3G28030 | PredictedPhenotypic Enhancement | FSW = 0.1496
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT5G40820 | PredictedPhenotypic SuppressionProtein-peptideSynthetic Lethalitysynthetic growth defect | FSW = 0.2207
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G08830 | PredictedSynthetic Lethality | FSW = 0.1647
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT1G10930 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic EnhancementAffinity Capture-WesternCo-purificationPhenotypic Enhancement | FSW = 0.3776
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G05740 | PredictedCo-purification | FSW = 0.1506
| Unknown | RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT4G09140 | PredictedCo-purification | FSW = 0.1649
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT5G22010 | PredictedCo-purificationPhenotypic Enhancement | FSW = 0.1498
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G04020 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.3794
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G04730 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.3949
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G18090 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancementinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.1832
| Unknown | EXONUCLEASE PUTATIVE |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0794
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.1909
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G60490 | Predictedsynthetic growth defect | FSW = 0.1213
| Unknown | ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT1G66740 | Predictedsynthetic growth defect | FSW = 0.3873
| Unknown | SGA2 |
AT1G67190 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2718
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.2001
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.2616
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44580 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.3508
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0419
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G02820 | Predictedsynthetic growth defect | FSW = 0.2875
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G12400 | Predictedsynthetic growth defect | FSW = 0.1867
| Unknown | ELC UBIQUITIN BINDING |
AT3G13440 | Predictedsynthetic growth defect | FSW = 0.0421
| Unknown | METHYLTRANSFERASE/ NUCLEIC ACID BINDING |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.2083
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.1952
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.4560
| Unknown | NUCLEOTIDE BINDING |
AT3G58560 | PredictedSynthetic Lethality | FSW = 0.2634
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.0808
| Unknown | PUX4 PROTEIN BINDING |
AT4G11920 | Predictedsynthetic growth defect | FSW = 0.1710
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G22140 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.1075
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G25120 | Predictedtwo hybridSynthetic LethalitySynthetic Lethalitysynthetic growth defectsynthetic growth defectAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.3760
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G29380 | Predictedsynthetic growth defect | FSW = 0.1058
| Unknown | PROTEIN KINASE FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G30870 | Predictedsynthetic growth defect | FSW = 0.2784
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G38630 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1021
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10270 | PredictedSynthetic Lethality | FSW = 0.1794
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.2243
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.2555
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.4901
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27970 | Predictedsynthetic growth defect | FSW = 0.1798
| Unknown | BINDING |
AT5G30495 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK) |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0772
| Unknown | BINDING |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0823
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G08840 | PredictedSynthetic Lethality | FSW = 0.2074
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G10170 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0089
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G54390 | PredictedPhenotypic Enhancement | FSW = 0.1449
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.2362
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.1499
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G79990 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT2G37550 | PredictedSynthetic Lethality | FSW = 0.0409
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G45700 | PredictedPhenotypic Enhancement | FSW = 0.1007
| Unknown | STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN |
AT3G06910 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0641
| Unknown | ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT3G20475 | Predictedtwo hybrid | FSW = 0.0565
| Unknown | MSH5 (MUTS-HOMOLOGUE 5) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.1649
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.1197
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G55310 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1383
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G63920 | Predictedsynthetic growth defect | FSW = 0.2293
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT3G05480 | PredictedPhenotypic Suppression | FSW = 0.0504
| Unknown | RAD9 |
AT5G02820 | PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.0480
| Unknown | RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING |
AT1G54770 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G304952) HAS 216 BLAST HITS TO 216 PROTEINS IN 112 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 26 (SOURCE NCBI BLINK) |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G29630 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementinterologs mappinginterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.0865
| Unknown | NUCLEASE |
AT3G26680 | PredictedPhenotypic Enhancement | FSW = 0.1058
| Unknown | SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) |
AT1G55255 | Predictedsynthetic growth defect | FSW = 0.1544
| Unknown | SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) |
AT5G40490 | Predictedsynthetic growth defect | FSW = 0.1289
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.1562
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.2161
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G07120 | Predictedsynthetic growth defect | FSW = 0.1919
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT3G49660 | Predictedsynthetic growth defect | FSW = 0.0923
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G55300 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0904
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT1G15920 | PredictedSynthetic Lethality | FSW = 0.2098
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454