Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G54260 - ( MRE11 (meiotic recombination 11) endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase )

112 Proteins interacs with AT5G54260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G02680

Experimental

two hybrid

FSW = 0.1414

Unknown

NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)
AT2G06510

Predicted

Phenotypic Enhancement

Colocalization

Phenotypic Enhancement

FSW = 0.1140

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT5G43530

Predicted

synthetic growth defect

FSW = 0.2724

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G48190

Predicted

Co-purification

Protein-peptide

FSW = 0.1183

Unknown

ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE
AT5G63110

Predicted

Phenotypic Enhancement

FSW = 0.1554

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT2G28190

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2013

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.1771

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G12520

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3202

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT3G48750

Predicted

synthetic growth defect

FSW = 0.0332

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT1G07670

Predicted

synthetic growth defect

FSW = 0.0561

Unknown

CALCIUM-TRANSPORTING ATPASE
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0421

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G18524

Predicted

Co-purification

FSW = 0.2442

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G16970

Predicted

Synthetic Rescue

Phenotypic Suppression

Phenotypic Suppression

Synthetic Rescue

in vivo

two hybrid

Affinity Capture-MS

FSW = 0.1399

Unknown

KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT1G08130

Predicted

two hybrid

FSW = 0.1543

Unknown

ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT2G44680

Predicted

Phenotypic Enhancement

FSW = 0.0859

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G26720

Predicted

Synthetic Lethality

FSW = 0.1402

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G67270

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.2058

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT1G21700

Predicted

Affinity Capture-Western

FSW = 0.0533

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT4G02070

Predicted

Co-purification

FSW = 0.2039

Unknown

MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT4G21010

Predicted

Phenotypic Enhancement

FSW = 0.0408

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT2G33610

Predicted

Affinity Capture-Western

FSW = 0.0229

Unknown

ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT1G51060

Predicted

Phenotypic Enhancement

FSW = 0.0194

Unknown

HTA10 DNA BINDING
AT5G22750

Predicted

synthetic growth defect

FSW = 0.2893

Unknown

RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G26150

Predicted

synthetic growth defect

FSW = 0.1124

Unknown

ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT1G07370

Predicted

Phenotypic Enhancement

FSW = 0.3368

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT1G65470

Predicted

synthetic growth defect

FSW = 0.2051

Unknown

FAS1 (FASCIATA 1) HISTONE BINDING
AT2G18760

Predicted

Phenotypic Suppression

FSW = 0.0345

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.1633

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1755

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G43810

Predicted

synthetic growth defect

FSW = 0.1410

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G64630

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1351

Unknown

FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1906

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

synthetic growth defect

FSW = 0.1692

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G44950

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2662

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G35940Predicted

Synthetic Lethality

synthetic growth defect

synthetic growth defect

Synthetic Lethality

FSW = 0.2615

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT1G10130

Predicted

synthetic growth defect

FSW = 0.0452

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G47690

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.1353

Unknown

ATEB1A MICROTUBULE BINDING
AT5G41150

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.2472

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT2G31970

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Synthetic Rescue

Synthetic Lethality

Reconstituted Complex

Phenotypic Suppression

Co-purification

Colocalization

Colocalization

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Colocalization

two hybrid

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Co-purification

in vitro

in vivo

two hybrid

in vivo

in vitro

Co-purification

Affinity Capture-Western

co-fractionation

Co-fractionation

Synthetic Rescue

Synthetic Lethality

Affinity Capture-MS

Reconstituted Complex

Phenotypic Suppression

interologs mapping

interaction prediction

FSW = 0.6582

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G66130

Predicted

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.2921

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G19910

Predicted

synthetic growth defect

FSW = 0.2228

Unknown

SOH1 FAMILY PROTEIN
AT3G05210

Predicted

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.1142

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT3G28030

Predicted

Phenotypic Enhancement

FSW = 0.1496

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G40820

Predicted

Phenotypic Suppression

Protein-peptide

Synthetic Lethality

synthetic growth defect

FSW = 0.2207

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT1G08830

Predicted

Synthetic Lethality

FSW = 0.1647

Unknown

CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT1G10930

Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

Affinity Capture-Western

Co-purification

Phenotypic Enhancement

FSW = 0.3776

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G05740

Predicted

Co-purification

FSW = 0.1506

Unknown

RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT4G09140

Predicted

Co-purification

FSW = 0.1649

Unknown

MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT5G22010

Predicted

Co-purification

Phenotypic Enhancement

FSW = 0.1498

Unknown

ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G04020

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.3794

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

interaction prediction

FSW = 0.3949

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G18090

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

interologs mapping

interologs mapping

Phenotypic Enhancement

interologs mapping

interologs mapping

Phenotypic Enhancement

FSW = 0.1832

Unknown

EXONUCLEASE PUTATIVE
AT1G29150

Predicted

Phenotypic Enhancement

FSW = 0.0794

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1909

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G60490

Predicted

synthetic growth defect

FSW = 0.1213

Unknown

ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G66740

Predicted

synthetic growth defect

FSW = 0.3873

Unknown

SGA2
AT1G67190

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2718

Unknown

F-BOX FAMILY PROTEIN
AT1G80410

Predicted

synthetic growth defect

FSW = 0.2001

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

synthetic growth defect

FSW = 0.2616

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44580

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.3508

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.0419

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G02820

Predicted

synthetic growth defect

FSW = 0.2875

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G12400

Predicted

synthetic growth defect

FSW = 0.1867

Unknown

ELC UBIQUITIN BINDING
AT3G13440

Predicted

synthetic growth defect

FSW = 0.0421

Unknown

METHYLTRANSFERASE/ NUCLEIC ACID BINDING
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.2083

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.1952

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G42660

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.4560

Unknown

NUCLEOTIDE BINDING
AT3G58560

Predicted

Synthetic Lethality

FSW = 0.2634

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G04210

Predicted

Phenotypic Enhancement

FSW = 0.0808

Unknown

PUX4 PROTEIN BINDING
AT4G11920

Predicted

synthetic growth defect

FSW = 0.1710

Unknown

CCS52A2 SIGNAL TRANSDUCER
AT4G22140

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.1075

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G25120Predicted

two hybrid

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

synthetic growth defect

Affinity Capture-Western

Phenotypic Enhancement

FSW = 0.3760

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G29380

Predicted

synthetic growth defect

FSW = 0.1058

Unknown

PROTEIN KINASE FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G30870

Predicted

synthetic growth defect

FSW = 0.2784

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G38630

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1021

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10270

Predicted

Synthetic Lethality

FSW = 0.1794

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.2243

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.2555

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.4901

Unknown

ENDONUCLEASE PUTATIVE
AT5G27970Predicted

synthetic growth defect

FSW = 0.1798

Unknown

BINDING
AT5G30495

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK)
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0772

Unknown

BINDING
AT1G07270

Predicted

Synthetic Lethality

FSW = 0.0823

Unknown

CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G08840Predicted

Synthetic Lethality

FSW = 0.2074

Unknown

EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G10170

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0089

Unknown

ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G54390

Predicted

Phenotypic Enhancement

FSW = 0.1449

Unknown

PHD FINGER PROTEIN-RELATED
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.2362

Unknown

SNL5 (SIN3-LIKE 5)
AT1G63160

Predicted

Phenotypic Enhancement

FSW = 0.1499

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G79990

Predicted

Affinity Capture-MS

FSW = 0.0134

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT2G37550

Predicted

Synthetic Lethality

FSW = 0.0409

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G45700

Predicted

Phenotypic Enhancement

FSW = 0.1007

Unknown

STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN
AT3G06910

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0641

Unknown

ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE
AT3G20475

Predicted

two hybrid

FSW = 0.0565

Unknown

MSH5 (MUTS-HOMOLOGUE 5) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1649

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G53770

Predicted

synthetic growth defect

FSW = 0.1197

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G55310

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1383

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G63920

Predicted

synthetic growth defect

FSW = 0.2293

Unknown

DNA TOPOISOMERASE III ALPHA PUTATIVE
AT3G05480

Predicted

Phenotypic Suppression

FSW = 0.0504

Unknown

RAD9
AT5G02820

Predicted

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.0480

Unknown

RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT1G54770

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G304952) HAS 216 BLAST HITS TO 216 PROTEINS IN 112 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 26 (SOURCE NCBI BLINK)
AT1G52360

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G29630

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

interologs mapping

interologs mapping

interologs mapping

Phenotypic Enhancement

FSW = 0.0865

Unknown

NUCLEASE
AT3G26680

Predicted

Phenotypic Enhancement

FSW = 0.1058

Unknown

SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT1G55255Predicted

synthetic growth defect

FSW = 0.1544

Unknown

SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)
AT5G40490

Predicted

synthetic growth defect

FSW = 0.1289

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G23420

Predicted

synthetic growth defect

FSW = 0.1562

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G14400

Predicted

synthetic growth defect

FSW = 0.2161

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT3G07120

Predicted

synthetic growth defect

FSW = 0.1919

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G49660

Predicted

synthetic growth defect

FSW = 0.0923

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G55300

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0904

Unknown

TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT1G15920

Predicted

Synthetic Lethality

FSW = 0.2098

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454