Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G65430 - ( GRF8 (GENERAL REGULATORY FACTOR 8) protein binding / protein phosphorylated amino acid binding )
126 Proteins interacs with AT5G65430Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0399
| Class A:nucleusClass B:vacuoleplastidplasma membraneperoxisomecytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G37130 | Experimentaltwo hybrid | FSW = 0.0903
| Class B:vacuoleplastidplasma membranenucleusClass D:cytosol (p = 0.67) | NIA2 (NITRATE REDUCTASE 2) NITRATE REDUCTASE (NADH)/ NITRATE REDUCTASE |
AT1G75080 | Experimentalinteraction detection methodtwo hybridAffinity Capture-Westernaffinity technologytwo hybrid | FSW = 0.0677
| Class D:nucleus (p = 0.78) | BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR |
AT4G27090 | PredictedPhenotypic Suppression | FSW = 0.0411
| Class C:plastidnucleus | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT5G10450 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1147
| Class C:plastidnucleus | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G09000 | PredictedPhylogenetic profile method | FSW = 0.1635
| Class C:plastidnucleus | 14-3-3-LIKE PROTEIN GF14 CHI / GENERAL REGULATORY FACTOR 1 (GRF1) |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0525
| Class C:plastidnucleus | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G55920 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1261
| Class C:plastidnucleus | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0331
| Class C:plastid | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0621
| Class C:plastid | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1270
| Class C:plastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.0891
| Class C:plastid | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT3G02520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0493
| Class C:plastid | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0165
| Class C:plastid | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT3G55400 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1016
| Class C:plastid | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0248
| Class C:plastid | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G40400 | PredictedPhenotypic Enhancement | FSW = 0.0348
| Class C:plastid | UNKNOWN PROTEIN |
AT1G56050 | PredictedPhenotypic Enhancement | FSW = 0.0782
| Class C:plastid | GTP-BINDING PROTEIN-RELATED |
AT5G15450 | PredictedPhenotypic Suppression | FSW = 0.0437
| Class C:plastid | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G06290 | Predictedbiochemical | FSW = 0.0236
| Class C:plastid | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT2G42590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1216
| Class C:nucleus | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G35160 | PredictedPhylogenetic profile method | FSW = 0.0912
| Class C:nucleus | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48930 | Predictedbiochemical | FSW = 0.0201
| Class C:nucleus | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.0281
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.0863
| Class C:nucleus | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0487
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
AT3G13445 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1115
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1626
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G12840 | PredictedPhenotypic Suppression | FSW = 0.0401
| Class C:nucleus | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1236
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT4G36130 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT5G10350 | PredictedPhenotypic Enhancement | FSW = 0.0618
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G26590 | Predictedbiochemical | FSW = 0.0245
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G65540 | PredictedPhenotypic Enhancement | FSW = 0.0092
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G19980 | PredictedAffinity Capture-MS | FSW = 0.0738
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G38480 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0868
| Unknown | GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.0197
| Unknown | SELENOPROTEIN-RELATED |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1174
| Unknown | ZINC ION BINDING |
AT5G16050 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1724
| Unknown | GRF5 (GENERAL REGULATORY FACTOR 5) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G04750 | Predictedsynthetic growth defect | FSW = 0.1077
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.1481
| Unknown | ATVAMP725 |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0903
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G22300 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1856
| Unknown | GRF10 (GENERAL REGULATORY FACTOR 10) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1305
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G19930 | PredictedPhenotypic Enhancement | FSW = 0.0702
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedAffinity Capture-MS | FSW = 0.1017
| Unknown | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G32090 | PredictedPhenotypic Enhancement | FSW = 0.0541
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G00520 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | ACYL-COA THIOESTERASE FAMILY PROTEIN |
AT2G18700 | PredictedPhenotypic Enhancement | FSW = 0.0361
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G30990 | PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | BINDING |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | PredictedPhenotypic Enhancement | FSW = 0.0163
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.1356
| Unknown | PSF2 |
AT3G60360 | PredictedPhenotypic Enhancement | FSW = 0.1004
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.1275
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT4G29430 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G02970 | PredictedPhenotypic Suppression | FSW = 0.0120
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
AT1G05785 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0878
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT1G14310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0855
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
AT1G20693 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1529
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G27040 | PredictedPhenotypic Suppression | FSW = 0.0761
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G34460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0540
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G55255 | PredictedPhenotypic Enhancement | FSW = 0.0072
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G60680 | PredictedPhenotypic Enhancement | FSW = 0.0813
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic Enhancement | FSW = 0.0650
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT1G79210 | PredictedAffinity Capture-MS | FSW = 0.0446
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0406
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0772
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.0873
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.1650
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G38600 | PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.1537
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G06460 | PredictedPhenotypic Enhancement | FSW = 0.0394
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G06483 | PredictedPhenotypic Enhancement | FSW = 0.0907
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0876
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G11830 | PredictedPhenotypic Enhancement | FSW = 0.0163
| Unknown | CHAPERONIN PUTATIVE |
AT3G13210 | PredictedPhenotypic Enhancement | FSW = 0.1090
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G18850 | PredictedPhenotypic Enhancement | FSW = 0.0643
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G25597 | PredictedPhenotypic Suppression | FSW = 0.0073
| Unknown | UNKNOWN PROTEIN |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.0792
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.0953
| Unknown | ATATG18A |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1370
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G04695 | PredictedPhenotypic Enhancement | FSW = 0.1031
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.0555
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G25960 | PredictedPhenotypic Suppression | FSW = 0.0132
| Unknown | PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G30820 | PredictedPhenotypic Suppression | FSW = 0.0244
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.1314
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G10830 | PredictedPhenotypic Enhancement | FSW = 0.0181
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.0223
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G38110 | PredictedPhenotypic Suppression | FSW = 0.0766
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G45620 | PredictedPhenotypic Enhancement | FSW = 0.0865
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G57270 | PredictedPhenotypic Enhancement | FSW = 0.0173
| Unknown | UNKNOWN PROTEIN |
AT5G58380 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.1185
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.0274
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G20696 | PredictedAffinity Capture-MS | FSW = 0.0658
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0773
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0899
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.1326
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G71530 | PredictedPhenotypic Enhancement | FSW = 0.0281
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.0736
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.1361
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.1015
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.1306
| Unknown | UNKNOWN PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G36260 | PredictedPhenotypic Suppression | FSW = 0.0361
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.0498
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G11290 | PredictedPhenotypic Enhancement | FSW = 0.0451
| Unknown | UNKNOWN PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.1560
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT4G14000 | PredictedSynthetic Lethality | FSW = 0.0047
| Unknown | UNKNOWN PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0126
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0642
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | UBIQUITIN-RELATED |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.0977
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT5G54940 | PredictedPhenotypic Enhancement | FSW = 0.0695
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0895
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0526
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT1G26480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1207
| Unknown | GRF12 (GENERAL REGULATORY FACTOR 12) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G78220 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1986
| Unknown | GRF13 PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G34760 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1341
| Unknown | GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G22290 | PredictedPhylogenetic profile method | FSW = 0.0401
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454