Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02850 - ( SKOR cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel )
5 Proteins interacs with AT3G02850| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G37500
   | Experimentaltwo hybrid | FSW = 0.0504
| Class D:plasma membrane (p = 0.25)cytosol (p = 0.67) | GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL) CYCLIC NUCLEOTIDE BINDING / INWARD RECTIFIER POTASSIUM CHANNEL/ OUTWARD RECTIFIER POTASSIUM CHANNEL |
| AT1G05320
| PredictedGene fusion methodCo-expression | FSW = 0.2177
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN FRUIT CONTAINS INTERPRO DOMAIN/S PREFOLDIN (INTERPROIPR009053) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G322401) HAS 205658 BLAST HITS TO 89336 PROTEINS IN 2499 SPECIES ARCHAE - 2336 BACTERIA - 33619 METAZOA - 92986 FUNGI - 14305 PLANTS - 7441 VIRUSES - 1151 OTHER EUKARYOTES - 53820 (SOURCE NCBI BLINK) |
| AT5G57940
| Predictedtwo hybridin vitroin vitroin vivotwo hybrid | FSW = 0.0618
| Unknown | ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5) CALMODULIN BINDING / CYCLIC NUCLEOTIDE BINDING / POTASSIUM CHANNEL |
| AT1G12700
| PredictedGene fusion methodCo-expression | FSW = 0.2060
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN / PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT2G19130
| PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.2307
| Unknown | S-LOCUS LECTIN PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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