Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
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To have the most pleasant experience with AtPIN please read the following
You must indicate one locus to search for. If you don't have any in mind now and want to use AtPIN, try this demo by clicking here (AT2G47640)All database searches will be performed over the locus you entered, the resulting PPIs will be classified according to their detection evidence and AtPIN classesTo visualize the generated network you should export your search as XGMML or SIF file and use Cytoscape.The results page will include the SUBA location of all interaction proteins as well the TAIR gene ontologies and annotations and descriptions.The interactions database includes all interactions present at the Arabidopsis thaliana Protein Interactome Database, the Predicted Interactome for Arabidopsis, Arabidopsis protein-protein interaction data curated from the literature by TAIR curators, BIOGRID and IntActIf you have any question please write to atpin [at symbol] bioinfoguy.net.If you find AtPIN interesting and want to use it in your work please cite us:
AtPIN: Arabidopsis thaliana Protein Interaction NetworkMarcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Some statistics
RELEASE: 9Number of interactions: 96276Database statisticsDownload PPIs