Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G27920 - ( ATMYB0 (MYB DOMAIN PROTEIN 0) DNA binding / protein binding / transcription activator/ transcription factor )

10 Proteins interacs with AT3G27920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G46410

Experimental

Phenotypic Enhancement

FSW = 0.5988

Class A:

nucleus

Class B:

unclear

Class D:

nucleus (p = 0.78)

 CPC (CAPRICE) DNA BINDING / TRANSCRIPTION FACTOR
AT5G41315

Experimental

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

confocal microscopy

Affinity Capture-Western

affinity technology

FSW = 0.6001

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 GL3 (GLABROUS 3) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G00480

Experimental

two hybrid

FSW = 0.3289

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 MYC-RELATED TRANSCRIPTION FACTOR (MYC1)
AT5G53200

Experimental

confocal microscopy

FSW = 0.5653

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 TRY (TRIPTYCHON) DNA BINDING / TRANSCRIPTION FACTOR
AT1G63650

Experimental

two hybrid

two hybrid

FSW = 0.5389

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 EGL3 (ENHANCER OF GLABRA 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G40330

Experimental

Phenotypic Enhancement

FSW = 0.4931

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 MYB23 (MYB DOMAIN PROTEIN 23) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G48100

Experimental

FSW = 0.0473

Class D:

nucleus (p = 0.78)

 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G24520

Experimental

Phenotypic Enhancement

pull down

FSW = 0.2307

Unknown

 TTG1 (TRANSPARENT TESTA GLABRA 1) DNA BINDING / NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G14750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4931

Class C:

nucleus

 ATMYB66 (MYB DOMAIN PROTEIN 66) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT3G23250

Predicted

Gene fusion method

Co-expression

FSW = 0.0482

Class C:

nucleus

 MYB15 (MYB DOMAIN PROTEIN 15) DNA BINDING / TRANSCRIPTION FACTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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