Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16390 - ( LOCATED IN chloroplast EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Pentatricopeptide repeat (InterProIPR002885) Smr protein/MutS2 C-terminal (InterProIPR002625) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT5G465801) Has 19821 Blast hits to 5782 proteins in 183 species Archae - 2 Bacteria - 24 Metazoa - 276 Fungi - 350 Plants - 18437 Viruses - 0 Other Eukaryotes - 732 (source NCBI BLink) )

5 Proteins interacs with AT4G16390
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G20930

Predicted

Gene fusion method

FSW = 0.2177

Class C:

plastid

 TSL (TOUSLED) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G22730

Predicted

Gene fusion method

FSW = 0.3927

Unknown

 LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE
AT5G14270

Predicted

Gene fusion method

FSW = 0.2455

Unknown

 ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9) DNA BINDING
AT3G18020

Predicted

Gene fusion method

FSW = 0.4138

Unknown

 PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G01550

Predicted

Gene fusion method

FSW = 0.2622

Unknown

 LECRKA42 (LECTIN RECEPTOR KINASE A41) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ SUGAR BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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