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AT4G33520 - ( PAA1 (P-TYPE ATP-ASE 1) ATPase coupled to transmembrane movement of ions phosphorylative mechanism / copper ion transmembrane transporter )

4 Proteins interacs with AT4G33520

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G21930	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2307	Class C: plastid	PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER
AT4G36530	Predicted Enriched domain pair Gene neighbors method Co-expression	FSW = 0.0745	Class C: plastid	HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G44790	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.1341	Unknown	RAN1 (RESPONSIVE-TO-ANTAGONIST 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / COPPER ION TRANSMEMBRANE TRANSPORTER
AT1G63440	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3607	Unknown	HMA5 (HEAVY METAL ATPASE 5) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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