Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22850 - ( INVOLVED IN biological_process unknown LOCATED IN chloroplast EXPRESSED IN 22 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s SNARE associated Golgi protein (InterProIPR015414) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G032601) Has 3098 Blast hits to 3098 proteins in 664 species Archae - 6 Bacteria - 1614 Metazoa - 182 Fungi - 59 Plants - 145 Viruses - 0 Other Eukaryotes - 1092 (source NCBI BLink) )

1 Proteins interacs with AT1G22850
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G29430

Predicted

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FSW = 0.2000

Class C:

plastid

 GERANYLGERANYL PYROPHOSPHATE SYNTHASE PUTATIVE / GGPP SYNTHETASE PUTATIVE / FARNESYLTRANSTRANSFERASE PUTATIVE

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Fasta sequences:

Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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