Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G60950 - ( FED A 2 iron 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding )

10 Proteins interacs with AT1G60950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G42980

Experimental

enzymatic study

FSW = 0.0237

Class A:

plastid

Class B:

plasma membrane

peroxisome

mitochondrion

extracellular

cytosol

 ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT4G22890

Experimental

confocal microscopy

confocal microscopy

protein complementation assay

two hybrid

split-reporter assay

FSW = 0.3737

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 PGR5-LIKE A
AT4G11960

Experimental

protein complementation assay

split-reporter assay

FSW = 0.3565

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 PGRL1B (PGR5-LIKE B)
AT3G09150

Experimental

Reconstituted Complex

FSW = 0.0482

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

extracellular (p = 0.86)

 HY2 (ELONGATED HYPOCOTYL 2) PHYTOCHROMOBILINFERREDOXIN OXIDOREDUCTASE
AT2G05620

Experimental

two hybrid

two hybrid

FSW = 0.1775

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PGR5 (PROTON GRADIENT REGULATION 5) ELECTRON CARRIER
AT1G20020

Experimental

affinity technology

FSW = 0.2742

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2) NADPH DEHYDROGENASE/ OXIDOREDUCTASE/ POLY(U) BINDING
AT5G66190

Experimental

affinity technology

FSW = 0.3036

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) NADPH DEHYDROGENASE/ ELECTRON TRANSPORTER TRANSFERRING ELECTRONS WITHIN THE CYCLIC ELECTRON TRANSPORT PATHWAY OF PHOTOSYNTHESIS/ ELECTRON TRANSPORTER TRANSFERRING ELECTRONS WITHIN THE NONCYCLIC ELECTRON TRANSP
AT4G14890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3004

Class C:

plastid

 FERREDOXIN FAMILY PROTEIN
AT5G10000

Predicted

Gene fusion method

FSW = 0.1641

Class C:

plastid

 ATFD4 (FERREDOXIN 4) 2 IRON 2 SULFUR CLUSTER BINDING / ELECTRON CARRIER/ IRON-SULFUR CLUSTER BINDING
AT2G27510

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3004

Unknown

 ATFD3 (FERREDOXIN 3) 2 IRON 2 SULFUR CLUSTER BINDING / ELECTRON CARRIER/ IRON-SULFUR CLUSTER BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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