Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  


AtPIN will be upgraded. Please send your suggestions here

AT5G66190 - ( FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) NADPH dehydrogenase/ electron transporter transferring electrons within the cyclic electron transport pathway of photosynthesis/ electron transporter transferring electrons within the noncyclic electron transp )

9 Proteins interacs with AT5G66190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G20020

Experimental

in vitro

FSW = 0.6644

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 FNR2 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 2) NADPH DEHYDROGENASE/ OXIDOREDUCTASE/ POLY(U) BINDING
AT3G18890

Experimental

Reconstituted Complex

FSW = 0.1015

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 BINDING / CATALYTIC/ COENZYME BINDING
AT4G22890

Experimental

protein complementation assay

split-reporter assay

FSW = 0.3036

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PGR5-LIKE A
AT4G11960

Experimental

protein complementation assay

split-reporter assay

FSW = 0.2882

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 PGRL1B (PGR5-LIKE B)
AT1G60950

Experimental

affinity technology

FSW = 0.3036

Class A:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

 FED A 2 IRON 2 SULFUR CLUSTER BINDING / ELECTRON CARRIER/ IRON-SULFUR CLUSTER BINDING
AT1G30510

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1015

Class C:

plastid

 ATRFNR2 (ROOT FNR 2) FAD BINDING / NADP OR NADPH BINDING / ELECTRON CARRIER/ FERREDOXIN-NADP+ REDUCTASE/ OXIDOREDUCTASE
AT4G05390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1015

Class C:

plastid

 ATRFNR1 (ROOT FNR 1) FAD BINDING / NADP OR NADPH BINDING / ELECTRON CARRIER/ FERREDOXIN-NADP+ REDUCTASE/ OXIDOREDUCTASE
AT5G54500

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.1861

Unknown

 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) FMN BINDING / OXIDOREDUCTASE ACTING ON NADH OR NADPH QUINONE OR SIMILAR COMPOUND AS ACCEPTOR
AT5G17770

Predicted

Shared biological function

Enriched domain pair

Co-expression

FSW = 0.1203

Unknown

 ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMP

TAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71

         

This page takes 0.221 seconds to be build.