Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G62680 - ( LOCATED IN chloroplast EXPRESSED IN shoot apex leaf whorl flower seed EXPRESSED DURING F mature embryo stage petal differentiation and expansion stage CONTAINS InterPro DOMAIN/s Pentatricopeptide repeat (InterProIPR002885) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT1G631301) Has 26421 Blast hits to 6237 proteins in 192 species Archae - 5 Bacteria - 22 Metazoa - 845 Fungi - 755 Plants - 23373 Viruses - 0 Other Eukaryotes - 1421 (source NCBI BLink) )
9 Proteins interacs with AT1G62680| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G30120
   | PredictedGene fusion method | FSW = 0.1426
| Unknown | HMA3 (HEAVY METAL ATPASE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
| AT1G62670
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1381
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT1G62930
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1469
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT1G631301) HAS 29147 BLAST HITS TO 6292 PROTEINS IN 192 SPECIES ARCHAE - 8 BACTERIA - 22 METAZOA - 1258 FUNGI - 858 PLANTS - 25291 VIRUSES - 0 OTHER EUKARYOTES - 1710 (SOURCE NCBI BLINK) |
| AT2G32830
| PredictedGene fusion method | FSW = 0.0529
| Unknown | PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
| AT1G03740
| PredictedGene fusion method | FSW = 0.0529
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G00350
| PredictedGene fusion method | FSW = 0.1426
| Unknown | MATE EFFLUX FAMILY PROTEIN |
| AT4G23220
| PredictedGene fusion method | FSW = 0.1641
| Unknown | KINASE |
| AT1G62940
| PredictedGene fusion method | FSW = 0.0618
| Unknown | ACOS5 (ACYL-COA SYNTHETASE 5) 4-COUMARATE-COA LIGASE/ LONG-CHAIN-FATTY-ACID-COA LIGASE/ MEDIUM-CHAIN-FATTY-ACID-COA LIGASE |
| AT4G33370
| PredictedGene fusion method | FSW = 0.1262
| Unknown | DEAD-BOX PROTEIN ABSTRAKT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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