Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G62930 - ( INVOLVED IN biological_process unknown EXPRESSED IN 21 plant structures EXPRESSED DURING 14 growth stages CONTAINS InterPro DOMAIN/s Pentatricopeptide repeat (InterProIPR002885) BEST Arabidopsis thaliana protein match is pentatricopeptide (PPR) repeat-containing protein (TAIRAT1G631301) Has 29147 Blast hits to 6292 proteins in 192 species Archae - 8 Bacteria - 22 Metazoa - 1258 Fungi - 858 Plants - 25291 Viruses - 0 Other Eukaryotes - 1710 (source NCBI BLink) )

9 Proteins interacs with AT1G62930
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49240

Predicted

Gene fusion method

Co-expression

FSW = 0.3297

Unknown

EMB1796 (EMBRYO DEFECTIVE 1796) ATP BINDING
AT1G25390

Predicted

Gene fusion method

FSW = 0.1696

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G01750

Predicted

Gene fusion method

FSW = 0.3297

Unknown

ATMAP70-3 (MICROTUBULE-ASSOCIATED PROTEINS 70-3) MICROTUBULE BINDING
AT4G03490Predicted

Gene fusion method

Co-expression

FSW = 0.6644

Unknown

PROTEIN BINDING
AT1G62670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1381

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G63150

Predicted

Gene fusion method

Co-expression

FSW = 0.5027

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G62680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1469

Unknown

LOCATED IN CHLOROPLAST EXPRESSED IN SHOOT APEX LEAF WHORL FLOWER SEED EXPRESSED DURING F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT1G631301) HAS 26421 BLAST HITS TO 6237 PROTEINS IN 192 SPECIES ARCHAE - 5 BACTERIA - 22 METAZOA - 845 FUNGI - 755 PLANTS - 23373 VIRUSES - 0 OTHER EUKARYOTES - 1421 (SOURCE NCBI BLINK)
AT3G01085

Predicted

Gene fusion method

FSW = 0.3607

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G21500

Predicted

Gene fusion method

FSW = 0.2814

Unknown

1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454