Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G75040 - ( PR5 (PATHOGENESIS-RELATED GENE 5) )
13 Proteins interacs with AT1G75040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42980 | Experimentalenzymatic study | FSW = 0.0192
| Class A:extracellularClass B:vacuoleplastidplasma membraneperoxisomemitochondrioncytosol | ATTRX3 (THIOREDOXIN 3) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT2G14610 | PredictedShared biological functionCo-expression | FSW = 0.0263
| Class C:extracellular | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT2G28790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5490
| Class C:extracellular | OSMOTIN-LIKE PROTEIN PUTATIVE |
AT1G22070 | PredictedShared biological functionCo-expression | FSW = 0.0618
| Unknown | TGA3 DNA BINDING / CALMODULIN BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G48090 | PredictedShared biological functionCo-expression | FSW = 0.1429
| Unknown | EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1) LIPASE/ SIGNAL TRANSDUCER/ TRIACYLGLYCEROL LIPASE |
AT1G75030 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6624
| Unknown | ATLP-3 |
AT2G17860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7414
| Unknown | PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN |
AT4G36000 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5263
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OTHER ORGANISM LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN ROOT CONTAINS INTERPRO DOMAIN/S THAUMATIN PATHOGENESIS-RELATED (INTERPROIPR001938) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G241801) HAS 1043 BLAST HITS TO 945 PROTEINS IN 126 SPECIES ARCHAE - 0 BACTERIA - 6 METAZOA - 42 FUNGI - 41 PLANTS - 948 VIRUSES - 2 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
AT4G24180 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5490
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO OTHER ORGANISM LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S THAUMATIN PATHOGENESIS-RELATED (INTERPROIPR001938) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS THAUMATIN PUTATIVE (TAIRAT4G386602) HAS 1060 BLAST HITS TO 1045 PROTEINS IN 143 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 46 FUNGI - 45 PLANTS - 935 VIRUSES - 3 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK) |
AT1G19320 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5832
| Unknown | PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN |
AT1G18250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5240
| Unknown | ATLP-1 |
AT4G38670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5538
| Unknown | PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN |
AT4G11650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4386
| Unknown | ATOSM34 (OSMOTIN 34) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454