Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G28800 - ( ALB3 (ALBINO 3) P-P-bond-hydrolysis-driven protein transmembrane transporter )
15 Proteins interacs with AT2G28800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18710 | ExperimentalAffinity Capture-Westernmolecular sievingelectron microscopyprotein complementation assayco-fractionationCo-fractionation | FSW = 0.2048
| Class A:plastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | SCY1 (SECY HOMOLOG 1) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT2G47450 | Experimental | FSW = 0.1559
| Class A:plastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | CAO (CHAOS) CHROMATIN BINDING |
AT4G14870 | Experimental | FSW = 0.3158
| Class A:plastidClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT2G45770 | Experimental | FSW = 0.0896
| Class A:plastidClass D:plastid (p = 0.78) | CPFTSY 7S RNA BINDING / GTP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
ATCG00020 | Experimental | FSW = 0.0482
| Class A:plastid | ENCODES CHLOROPHYLL BINDING PROTEIN D1 A PART OF THE PHOTOSYSTEM II REACTION CENTER CORE |
ATCG00270 | Experimental | FSW = 0.0381
| Class A:plastid | PSII D2 PROTEIN |
ATCG00280 | Experimental | FSW = 0.3158
| Class A:plastid | CHLOROPLAST GENE ENCODING A CP43 SUBUNIT OF THE PHOTOSYSTEM II REACTION CENTER PROMOTER CONTAINS A BLUE-LIGHT RESPONSIVE ELEMENT |
ATCG00350 | Experimental | FSW = 0.2222
| Class A:plastid | ENCODES PSAA PROTEIN COMPRISING THE REACTION CENTER FOR PHOTOSYSTEM I ALONG WITH PSAB PROTEIN HYDROPHOBIC PROTEIN ENCODED BY THE CHLOROPLAST GENOME |
ATCG00140 | Experimental | FSW = 0.0381
| Class A:plastid | ATPASE III SUBUNIT |
AT5G51545 | Experimentaltwo hybrid | FSW = 0.1341
| Class A:plastid | LPA2 (LOW PSII ACCUMULATION2) |
AT2G39630 | Experimentalprotein complementation assay | FSW = 0.0462
| Class B:plastidendoplasmic reticulumClass D:plastid (p = 0.78) | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT5G62000 | Experimental | FSW = 0.0410
| Class D:plastid (p = 0.78) | ARF2 (AUXIN RESPONSE FACTOR 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
ARTHCP002 | Experimentalprotein complementation assay | FSW = 0.0443
| Unknown | ARF2 (AUXIN RESPONSE FACTOR 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
ARTHCP018 | Experimentalprotein complementation assay | FSW = 0.0803
| Unknown | ARF2 (AUXIN RESPONSE FACTOR 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
ARTHCP022 | Experimentalprotein complementation assay | FSW = 0.0395
| Unknown | ARF2 (AUXIN RESPONSE FACTOR 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454