Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G40030 - ( NRPD1B DNA binding / DNA-directed RNA polymerase )
6 Proteins interacs with AT2G40030| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G32950
   | Experimental | FSW = 0.0356
| Class D:nucleus (p = 0.78) | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G27040
| Experimentalcoimmunoprecipitationpull downReconstituted ComplexAffinity Capture-Westerncoimmunoprecipitationin vitro | FSW = 0.1170
| Class D:nucleus (p = 0.78) | AGO4 (ARGONAUTE 4) NUCLEIC ACID BINDING |
| AT5G04290
| Experimental | FSW = 0.1170
| Class D:nucleus (p = 0.78) | KTF1 (KOW DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1) NUCLEOTIDE BINDING |
| AT2G16390
| ExperimentalAffinity Capture-MSAffinity Capture-Western | FSW = 0.2000
| Unknown | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| ETG27161 | ExperimentalReconstituted Complex | FSW = 0.1131
| Unknown | DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT3G49250
| ExperimentalAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1469
| Unknown | DMS3 (DEFECTIVE IN MERISTEM SILENCING 3) |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.154 seconds to be build.
This page takes 0.154 seconds to be build.