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AT2G46430 - ( ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3) calmodulin binding / cyclic nucleotide binding / ion channel )

4 Proteins interacs with AT2G46430

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G01340	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.2177	Class C: plasma membrane	ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10) CALMODULIN BINDING / CYCLIC NUCLEOTIDE BINDING / ION CHANNEL
AT5G53130	Predicted Phylogenetic profile method	FSW = 0.1684	Class C: plasma membrane	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) CALMODULIN BINDING / CATION CHANNEL/ CYCLIC NUCLEOTIDE BINDING / INTRACELLULAR CYCLIC NUCLEOTIDE ACTIVATED CATION CHANNEL/ INWARD RECTIFIER POTASSIUM CHANNEL
AT5G67450	Predicted two hybrid	FSW = 0.0800	Unknown	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING
AT5G14870	Predicted Gene fusion method	FSW = 0.1684	Unknown	CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) CALMODULIN BINDING / CYCLIC NUCLEOTIDE BINDING / ION CHANNEL

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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