Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G11330 - ( leucine-rich repeat family protein )
19 Proteins interacs with AT3G11330Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedGene fusion method | FSW = 0.0123
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT5G23210 | PredictedGene fusion method | FSW = 0.0331
| Unknown | SCPL34 SERINE-TYPE CARBOXYPEPTIDASE |
AT4G30310 | PredictedGene fusion method | FSW = 0.0404
| Unknown | RIBITOL KINASE PUTATIVE |
AT5G35360 | PredictedGene fusion method | FSW = 0.0824
| Unknown | CAC2 ACETYL-COA CARBOXYLASE/ BIOTIN CARBOXYLASE |
AT4G31500 | PredictedGene fusion method | FSW = 0.5586
| Unknown | CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN / OXYGEN BINDING |
AT3G24170 | PredictedGene fusion method | FSW = 0.1118
| Unknown | ATGR1 (GLUTATHIONE-DISULFIDE REDUCTASE) FAD BINDING / NADP OR NADPH BINDING / GLUTATHIONE-DISULFIDE REDUCTASE/ OXIDOREDUCTASE |
AT5G50950 | PredictedGene fusion method | FSW = 0.0909
| Unknown | FUMARATE HYDRATASE PUTATIVE / FUMARASE PUTATIVE |
AT3G44250 | PredictedGene fusion method | FSW = 0.6207
| Unknown | CYP71B38 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT4G37360 | PredictedGene fusion method | FSW = 0.6207
| Unknown | CYP81D2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G26190 | PredictedGene fusion method | FSW = 0.6207
| Unknown | CYP71B21 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G02700 | PredictedGene fusion method | FSW = 0.0334
| Unknown | DC1 DOMAIN-CONTAINING PROTEIN |
AT5G01060 | PredictedGene fusion method | FSW = 0.2236
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G42580 | PredictedGene fusion method | FSW = 0.5880
| Unknown | CYP705A12 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G56630 | PredictedGene fusion method | FSW = 0.6207
| Unknown | CYP94D2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G56050 | PredictedGene fusion method | FSW = 0.2236
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G34490 | PredictedGene fusion method | FSW = 0.5046
| Unknown | CYP710A2 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 2) C-22 STEROL DESATURASE/ OXYGEN BINDING |
AT5G61800 | PredictedGene fusion method | FSW = 0.2609
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G45430 | PredictedGene fusion method | FSW = 0.1304
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G40030 | PredictedGene fusion method | FSW = 0.7347
| Unknown | PROTEIN KINASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454