Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT3G16480 - ( MPPalpha (mitochondrial processing peptidase alpha subunit) catalytic/ metal ion binding / metalloendopeptidase/ zinc ion binding )
56 Proteins interacs with AT3G16480| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G16890
   | Experimentalco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.0316
| Unknown | PPR40 (PENTATRICOPEPTIDE (PPR) DOMAIN PROTEIN 40) |
| AT3G02090
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.0154
| Class C:vacuoleunclearmitochondrion | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
| AT5G63400
| PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:vacuoleunclearmitochondrion | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
| AT4G19640
| Predictedinterologs mapping | FSW = 0.0070
| Class C:vacuole | ARA7 GTP BINDING |
| AT5G24780
| PredictedAffinity Capture-MS | FSW = 0.0120
| Class C:vacuole | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
| AT4G28390
| PredictedSynthetic Lethality | FSW = 0.2036
| Class C:unclearmitochondrion | AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING |
| AT5G20020
| PredictedAffinity Capture-MS | FSW = 0.0322
| Class C:unclear | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT2G14120
| PredictedAffinity Capture-MS | FSW = 0.0119
| Class C:mitochondrion | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT2G47510
| PredictedAffinity Capture-MS | FSW = 0.0097
| Class C:mitochondrion | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
| AT2G41380
| PredictedAffinity Capture-MS | FSW = 0.0336
| Class C:mitochondrion | EMBRYO-ABUNDANT PROTEIN-RELATED |
| AT3G10920
| PredictedAffinity Capture-MS | FSW = 0.0152
| Class C:mitochondrion | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
| AT1G31190
| PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE/ INOSITOL-1(OR 4)-MONOPHOSPHATASE |
| AT3G18790
| PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
| AT5G40370
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0926
| Unknown | GLUTAREDOXIN PUTATIVE |
| AT1G04750
| PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
| AT3G06110
| PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | MKP2 (MAPK PHOSPHATASE 2) MAP KINASE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
| AT1G70580
| PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
| AT2G40290
| PredictedAffinity Capture-Western | FSW = 0.0420
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT1G72480
| PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
| AT3G28730
| PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
| AT4G21710
| PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G47490
| PredictedAffinity Capture-MSCo-crystal Structure | FSW = 0.0879
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
| AT2G21250
| PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
| AT2G22040
| PredictedAffinity Capture-MS | FSW = 0.0502
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G46070
| PredictedAffinity Capture-Western | FSW = 0.0686
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT1G07880
| PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | ATMPK13 MAP KINASE/ KINASE |
| AT1G10210
| PredictedAffinity Capture-MS | FSW = 0.0478
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
| AT1G20693
| PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
| AT1G22290
| PredictedAffinity Capture-MS | FSW = 0.0620
| Unknown | 14-3-3 PROTEIN GF14 PUTATIVE (GRF10) |
| AT1G30580
| PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | GTP BINDING |
| AT1G53900
| PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
| AT1G59580
| PredictedAffinity Capture-MS | FSW = 0.0506
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
| AT1G68200
| PredictedAffinity Capture-Western | FSW = 0.0100
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT2G15790
| PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| AT2G31020
| PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
| AT2G44530
| Predictedinterologs mapping | FSW = 0.0231
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
| AT3G09800
| PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | PROTEIN BINDING |
| AT3G18660
| Predictedinterologs mapping | FSW = 0.0464
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT3G45190
| PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT3G53880
| PredictedCo-purification | FSW = 0.0220
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT3G59790
| PredictedAffinity Capture-MS | FSW = 0.0792
| Unknown | ATMPK10 MAP KINASE/ KINASE |
| AT3G63280
| PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G25150
| PredictedAffinity Capture-MS | FSW = 0.0489
| Unknown | ACID PHOSPHATASE PUTATIVE |
| AT4G31790
| PredictedAffinity Capture-MS | FSW = 0.0172
| Unknown | DIPHTHINE SYNTHASE PUTATIVE (DPH5) |
| AT4G33070
| PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
| AT4G33200
| PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
| AT4G37680
| PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | HHP4 (HEPTAHELICAL PROTEIN 4) RECEPTOR |
| AT5G01390
| PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
| AT5G10830
| PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
| AT5G26110
| PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
| AT5G26250
| Predictedinterologs mapping | FSW = 0.0378
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G67100
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0346
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
| AT5G06150
| PredictedAffinity Capture-MS | FSW = 0.0560
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
| AT5G37830
| PredictedAffinity Capture-MS | FSW = 0.0701
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
| AT3G11330
| PredictedGene fusion method | FSW = 0.0123
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.817 seconds to be build.
This page takes 0.817 seconds to be build.