Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G72320 - ( APUM23 (Arabidopsis Pumilio 23) RNA binding / binding )
51 Proteins interacs with AT1G72320| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G16480
   | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
| AT3G62870
| Predictedsynthetic growth defect | FSW = 0.0057
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G22890
| Predictedsynthetic growth defect | FSW = 0.0024
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
| AT3G03920
| PredictedAffinity Capture-MS | FSW = 0.1286
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.4824
| Unknown | BINDING |
| AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.2568
| Unknown | RNA BINDING |
| AT2G37790
| PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
| AT2G40360
| PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G63810
| PredictedAffinity Capture-MS | FSW = 0.3490
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.2136
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G25630
| PredictedAffinity Capture-MS | FSW = 0.3067
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G56990
| PredictedAffinity Capture-MS | FSW = 0.2534
| Unknown | EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7) |
| AT4G13980
| Predictedbiochemical | FSW = 0.0097
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.1110
| Unknown | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT3G57150
| PredictedAffinity Capture-MS | FSW = 0.2077
| Unknown | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT4G19610 | PredictedAffinity Capture-MS | FSW = 0.0621
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G08180
| PredictedAffinity Capture-MS | FSW = 0.2039
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT1G48920
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1574
| Unknown | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G05060
| PredictedAffinity Capture-MS | FSW = 0.3087
| Unknown | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3955
| Unknown | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.2239
| Unknown | RNA HELICASE PUTATIVE |
| AT1G56110
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1563
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
| AT4G05410
| PredictedAffinity Capture-MS | FSW = 0.3776
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G66540
| PredictedAffinity Capture-MS | FSW = 0.3689
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK) |
| AT4G22380
| PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT2G47990
| PredictedAffinity Capture-MS | FSW = 0.3356
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
| AT1G50920
| PredictedAffinity Capture-MS | FSW = 0.0792
| Unknown | GTP-BINDING PROTEIN-RELATED |
| AT1G06720
| PredictedAffinity Capture-MS | FSW = 0.3792
| Unknown | INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G424401) HAS 7944 BLAST HITS TO 5342 PROTEINS IN 373 SPECIES ARCHAE - 33 BACTERIA - 667 METAZOA - 2609 FUNGI - 1045 PLANTS - 414 VIRUSES - 80 OTHER EUKARYOTES - 3096 (SOURCE NCBI BLINK) |
| AT1G15420
| PredictedAffinity Capture-MS | FSW = 0.1219
| Unknown | UNKNOWN PROTEIN |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.1906
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G31660
| PredictedAffinity Capture-MS | FSW = 0.2497
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.0805
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G55150
| PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
| AT5G44740
| Predictedbiochemical | FSW = 0.0297
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
| AT2G21440
| PredictedAffinity Capture-MS | FSW = 0.1722
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.2940
| Unknown | BINDING |
| AT2G34970
| PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN |
| AT2G47420
| PredictedAffinity Capture-MS | FSW = 0.2640
| Unknown | DIMETHYLADENOSINE TRANSFERASE PUTATIVE |
| AT3G01160
| PredictedAffinity Capture-MS | FSW = 0.1486
| Unknown | UNKNOWN PROTEIN |
| AT3G09720
| PredictedAffinity Capture-MS | FSW = 0.1770
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G10530
| PredictedAffinity Capture-MS | FSW = 0.3775
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G04940
| PredictedAffinity Capture-MS | FSW = 0.4040
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G07410
| PredictedAffinity Capture-MS | FSW = 0.4551
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G28200
| PredictedAffinity Capture-MS | FSW = 0.3865
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK) |
| AT4G28450
| PredictedAffinity Capture-MS | FSW = 0.3704
| Unknown | NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT5G14050
| PredictedAffinity Capture-MS | FSW = 0.1866
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MS | FSW = 0.1994
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G30495
| PredictedAffinity Capture-MS | FSW = 0.0399
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK) |
| AT5G61330
| PredictedAffinity Capture-MS | FSW = 0.1195
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.1800
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT4G12600
| PredictedAffinity Capture-MS | FSW = 0.1610
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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