Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G08180 - ( ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )
37 Proteins interacs with AT5G08180| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G56070
   | Predictedtwo hybridtwo hybrid | FSW = 0.0125
| Class C:nucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT3G03920
| Predictedinteraction predictionReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1867
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT4G12610
| Predictedtwo hybridtwo hybrid | FSW = 0.0584
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
| AT4G16830
| PredictedAffinity Capture-MS | FSW = 0.0294
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.1460
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G57150
| PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2390
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT4G25630
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1717
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.1439
| Class C:nucleus | RNA HELICASE PUTATIVE |
| AT2G41500
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0581
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT3G13445
| PredictedAffinity Capture-MS | FSW = 0.0083
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT1G55520
| PredictedAffinity Capture-MS | FSW = 0.0204
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
| AT3G18600
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0821
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT2G20490
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2530
| Class C:nucleus | NOP10 RNA BINDING |
| AT4G22380
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1894
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT5G20160
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0610
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | BINDING |
| AT2G40360
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1339
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT1G62850
| Predictedtwo hybridtwo hybrid | FSW = 0.0211
| Unknown | TRANSLATION RELEASE FACTOR |
| AT1G03530
| Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.0749
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G08880
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0221
| Unknown | H2AXA DNA BINDING |
| AT1G66510
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0439
| Unknown | AAR2 PROTEIN FAMILY |
| AT2G18220
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0992
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED PROTEIN FAMILY UPF0120 (INTERPROIPR005343) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RBL (REBELOTE) (TAIRAT3G555101) HAS 4846 BLAST HITS TO 3236 PROTEINS IN 249 SPECIES ARCHAE - 2 BACTERIA - 127 METAZOA - 2049 FUNGI - 594 PLANTS - 200 VIRUSES - 69 OTHER EUKARYOTES - 1805 (SOURCE NCBI BLINK) |
| AT3G24080
| PredictedAffinity Capture-MSCo-expression | FSW = 0.1719
| Unknown | KRR1 FAMILY PROTEIN |
| AT4G04940
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0798
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G17650
| PredictedAffinity Capture-MS | FSW = 0.0667
| Unknown | AROMATIC-RICH FAMILY PROTEIN |
| AT1G31970
| PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2315
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.2039
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT4G30870
| PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
| AT5G19300
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0448
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
| AT5G08420
| PredictedAffinity Capture-MS | FSW = 0.1087
| Unknown | RNA BINDING |
| AT5G14520
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0627
| Unknown | PESCADILLO-RELATED |
| AT5G65900
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1396
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G66100
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0573
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT4G35890
| PredictedAffinity Capture-MS | FSW = 0.0663
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
| AT5G39770
| Predictedinteraction prediction | FSW = 0.0508
| Unknown | DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
| AT4G12600
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1739
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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