Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G30870 - ( MUS81 (MMS AND UV SENSITIVE 81) endonuclease/ nucleic acid binding )
78 Proteins interacs with AT4G30870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | HISTONE H4 |
AT2G30620 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | HISTONE H12 |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0223
| Unknown | HISTONE H4 |
AT5G43530 | Predictedsynthetic growth defect | FSW = 0.1858
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G28190 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1754
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G11630 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.0886
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G12520 | Predictedsynthetic growth defect | FSW = 0.2075
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT3G03330 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.0245
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G44680 | PredictedPhenotypic Enhancement | FSW = 0.0793
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G63810 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G23620 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT5G27720 | Predictedtwo hybrid | FSW = 0.0035
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT5G08180 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G55920 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT3G07050 | PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT5G22750 | Predictedsynthetic growth defect | FSW = 0.2121
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT2G26150 | Predictedsynthetic growth defect | FSW = 0.1344
| Unknown | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.2104
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G19210 | Predictedtwo hybridsynthetic growth defectAffinity Capture-Westernsynthetic growth defect | FSW = 0.2574
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G25340 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT4G18040 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT2G44950 | PredictedPhenotypic Enhancement | FSW = 0.1225
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT5G41150 | PredictedPhenotypic Enhancement | FSW = 0.2215
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.2109
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT3G23890 | Predictedsynthetic growth defect | FSW = 0.0762
| Unknown | TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.0213
| Unknown | UNKNOWN PROTEIN |
AT1G62430 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0314
| Unknown | ATCDS1 PHOSPHATIDATE CYTIDYLYLTRANSFERASE |
AT5G40820 | Predictedsynthetic growth defect | FSW = 0.1197
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT3G05210 | PredictedPhenotypic Enhancement | FSW = 0.0856
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.2784
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G28030 | PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING |
AT1G06760 | PredictedAffinity Capture-MS | FSW = 0.0329
| Unknown | HISTONE H1 PUTATIVE |
AT4G13780 | PredictedAffinity Capture-MS | FSW = 0.0082
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
AT5G20850 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1691
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G08830 | Predictedsynthetic growth defect | FSW = 0.1470
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT4G35750 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | RHO-GTPASE-ACTIVATING PROTEIN-RELATED |
AT5G61530 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | SMALL G PROTEIN FAMILY PROTEIN / RHOGAP FAMILY PROTEIN |
AT1G09300 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | METALLOPEPTIDASE M24 FAMILY PROTEIN |
AT1G10930 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectsynthetic growth defectPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.2514
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G67190 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.2442
| Unknown | F-BOX FAMILY PROTEIN |
AT1G78770 | PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.1108
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G13170 | PredictedSynthetic Rescue | FSW = 0.0567
| Unknown | ATSPO11-1 ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ CATALYTIC |
AT3G24080 | PredictedAffinity Capture-MS | FSW = 0.0368
| Unknown | KRR1 FAMILY PROTEIN |
AT3G42660 | Predictedsynthetic growth defect | FSW = 0.2261
| Unknown | NUCLEOTIDE BINDING |
AT4G05320 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT4G14160 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G18905 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G25120 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectsynthetic growth defectsynthetic growth defect | FSW = 0.2431
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.2193
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.0584
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT2G28360 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.0514
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1029
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.1458
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G26680 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2432
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.1172
| Unknown | POLA3 DNA PRIMASE |
AT5G55310 | PredictedPhenotypic Enhancement | FSW = 0.0918
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G63920 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1856
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.0757
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G41010 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G43500 | Predictedsynthetic growth defect | FSW = 0.1837
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G46840 | PredictedAffinity Capture-MS | FSW = 0.0575
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G51130 | PredictedSynthetic Lethality | FSW = 0.1129
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S NSE4 (INTERPROIPR014854) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G207601) HAS 200 BLAST HITS TO 198 PROTEINS IN 89 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 63 FUNGI - 88 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 12 (SOURCE NCBI BLINK) |
AT5G67100 | PredictedPhenotypic Suppression | FSW = 0.0534
| Unknown | ICU2 (INCURVATA2) DNA-DIRECTED DNA POLYMERASE |
AT5G55300 | PredictedSynthetic Rescue | FSW = 0.0767
| Unknown | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G05520 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT3G12340 | PredictedAffinity Capture-MS | FSW = 0.0367
| Unknown | FK506 BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.1017
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1016
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G02820 | PredictedSynthetic Rescue | FSW = 0.0841
| Unknown | RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING |
AT1G08125 | Predictedtwo hybrid | FSW = 0.0329
| Unknown | EXPRESSED PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454