Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G27720 - ( emb1644 (embryo defective 1644) )

122 Proteins interacs with AT5G27720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07590

Predicted

Affinity Capture-MS

FSW = 0.1602

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840

Predicted

Affinity Capture-MS

FSW = 0.2265

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2402

Class C:

nucleus

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G20020

Predicted

Affinity Capture-MS

FSW = 0.0073

Class C:

nucleus

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G12780

Predicted

Protein-RNA

FSW = 0.0614

Class C:

nucleus

PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT5G64270

Predicted

Affinity Capture-MS

FSW = 0.1767

Class C:

nucleus

SPLICING FACTOR PUTATIVE
AT2G44680

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0276

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G08290

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2975

Class C:

nucleus

YLS8 CATALYTIC
AT4G29390Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0415

Class C:

nucleus

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G23930

Predicted

Affinity Capture-MS

FSW = 0.2272

Class C:

nucleus

SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT3G11500

Predicted

interaction prediction

FSW = 0.1998

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT1G79020

Predicted

Affinity Capture-MS

FSW = 0.0547

Class C:

nucleus

TRANSCRIPTION FACTOR-RELATED
AT2G38810

Predicted

Phenotypic Enhancement

FSW = 0.0163

Class C:

nucleus

HTA8 (HISTONE H2A 8) DNA BINDING
AT2G47640

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1972

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT1G20580

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2736

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2544

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G04510

Predicted

Co-purification

FSW = 0.1500

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G24490

Predicted

Affinity Capture-MS

FSW = 0.0193

Class C:

nucleus

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0557

Class C:

nucleus

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G41500

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2401

Class C:

nucleus

EMB2776 NUCLEOTIDE BINDING
AT2G36740

Predicted

two hybrid

FSW = 0.0225

Class C:

nucleus

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G43810

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

FSW = 0.1702

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G21190

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vitro

Affinity Capture-Western

FSW = 0.1701

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76860

Predicted

interaction prediction

in vitro

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

Co-expression

FSW = 0.2456

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30330

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.2305

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G03330

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.3237

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT3G17590

Predicted

two hybrid

interaction prediction

FSW = 0.0057

Class C:

nucleus

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT3G14080

Predicted

Affinity Capture-MS

in vitro

FSW = 0.0543

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G59810

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1338

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120

Predicted

interaction prediction

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

interologs mapping

in vitro

FSW = 0.1541

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Colocalization

interologs mapping

in vitro

interaction prediction

Co-expression

FSW = 0.1758

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G65700

Predicted

in vitro

Co-expression

FSW = 0.0684

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870

Predicted

interaction prediction

two hybrid

two hybrid

in vitro

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Co-expression

FSW = 0.2118

Class C:

nucleus

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT2G33120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0999

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT1G49240

Predicted

Synthetic Lethality

FSW = 0.0037

Unknown

ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.0084

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G31490

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT2G01690

Predicted

two hybrid

interaction prediction

FSW = 0.0020

Unknown

BINDING
AT3G62870

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0237

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G65540

Predicted

Affinity Capture-MS

FSW = 0.0044

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT2G33340

Predicted

Co-purification

FSW = 0.1558

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80070

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2270

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT3G55200Predicted

Affinity Capture-MS

FSW = 0.1052

Unknown

SPLICING FACTOR PUTATIVE
AT5G25400

Predicted

Affinity Capture-MS

FSW = 0.0898

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT2G25140

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G10070

Predicted

Affinity Capture-MS

FSW = 0.0550

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT3G12110

Predicted

Synthetic Lethality

FSW = 0.0082

Unknown

ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0035

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G55810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0688

Unknown

PYRUVATE KINASE PUTATIVE
AT3G11730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0406

Unknown

ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G62020

Predicted

interaction prediction

two hybrid

FSW = 0.0243

Unknown

COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT1G07110

Predicted

interaction prediction

two hybrid

FSW = 0.0183

Unknown

F2KP (FRUCTOSE-26-BISPHOSPHATASE) FRUCTOSE-26-BISPHOSPHATE 2-PHOSPHATASE
AT1G02520

Predicted

two hybrid

FSW = 0.0187

Unknown

PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G13320

Predicted

Affinity Capture-MS

FSW = 0.0273

Unknown

PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G47000

Predicted

two hybrid

interaction prediction

FSW = 0.0272

Unknown

ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT2G17420

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT2G13650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0301

Unknown

GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT5G02730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0497

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G31470

Predicted

Affinity Capture-MS

FSW = 0.0300

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G14580

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0247

Unknown

ATPRB1
AT3G10090Predicted

two hybrid

interologs mapping

interaction prediction

FSW = 0.0136

Unknown

40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT1G62800

Predicted

Phenotypic Enhancement

FSW = 0.0100

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT5G05710

Predicted

two hybrid

FSW = 0.0256

Unknown

PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN
AT1G02170

Predicted

Phenotypic Suppression

FSW = 0.0142

Unknown

AMC1 (METACASPASE 1) CYSTEINE-TYPE ENDOPEPTIDASE
AT1G06830

Predicted

Affinity Capture-MS

FSW = 0.0211

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G14640

Predicted

Affinity Capture-MS

FSW = 0.2484

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G26140

Predicted

Affinity Capture-MS

FSW = 0.1741

Unknown

UNKNOWN PROTEIN
AT1G31170

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0395

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0361

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G59890

Predicted

two hybrid

FSW = 0.0090

Unknown

SNL5 (SIN3-LIKE 5)
AT1G60170

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2991

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G78580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0089

Unknown

ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G03690

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0419

Unknown

COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G22040

Predicted

Affinity Capture-MS

FSW = 0.0646

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G32600

Predicted

two hybrid

interaction prediction

FSW = 0.1789

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT2G33560

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0331

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT3G05760

Predicted

Affinity Capture-MS

FSW = 0.1201

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G11910

Predicted

Affinity Capture-MS

FSW = 0.0107

Unknown

UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G16565

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G45190

Predicted

Affinity Capture-MS

FSW = 0.0110

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT3G55020

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0850

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G55220

Predicted

Affinity Capture-MS

FSW = 0.1780

Unknown

SPLICING FACTOR PUTATIVE
AT3G60240

Predicted

Affinity Capture-MS

FSW = 0.0215

Unknown

EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G00660

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0789

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT4G03430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2346

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G04950

Predicted

Affinity Capture-MS

FSW = 0.0115

Unknown

THIOREDOXIN FAMILY PROTEIN
AT4G29640

Predicted

Affinity Capture-MS

FSW = 0.0520

Unknown

CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G30870

Predicted

two hybrid

FSW = 0.0035

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G03850

Predicted

two hybrid

FSW = 0.0420

Unknown

40S RIBOSOMAL PROTEIN S28 (RPS28B)
AT5G06160

Predicted

Affinity Capture-MS

FSW = 0.1778

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0663

Unknown

EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G13570

Predicted

interaction prediction

two hybrid

FSW = 0.0351

Unknown

DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G20560

Predicted

Affinity Capture-MS

FSW = 0.0463

Unknown

BETA-13-GLUCANASE PUTATIVE
AT1G53900

Predicted

Affinity Capture-MS

FSW = 0.0481

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G56090

Predicted

Affinity Capture-MS

FSW = 0.0143

Unknown

TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G66810

Predicted

Affinity Capture-MS

FSW = 0.0982

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G06040

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0269

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0747

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G35390

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0366

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G37840

Predicted

biochemical

FSW = 0.0065

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G12200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0323

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18660

Predicted

synthetic growth defect

FSW = 0.0494

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G62770

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

ATATG18A
AT4G14670

Predicted

Affinity Capture-MS

FSW = 0.1685

Unknown

CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G14050

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0372

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15070

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G26110

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G27970Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0068

Unknown

BINDING
AT5G46150

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0168

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380

Predicted

Affinity Capture-MS

FSW = 0.0152

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G37830

Predicted

Affinity Capture-MS

FSW = 0.0858

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G65180

Predicted

two hybrid

interaction prediction

FSW = 0.0058

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT4G31480

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0163

Unknown

COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT1G16980

Predicted

Affinity Capture-MS

FSW = 0.0079

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G45810

Predicted

Affinity Capture-MS

FSW = 0.0419

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.0412

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G15770

Predicted

interaction prediction

interologs mapping

FSW = 0.0928

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT1G10450

Predicted

two hybrid

FSW = 0.0033

Unknown

SNL6 (SIN3-LIKE 6)
AT3G26990

Predicted

two hybrid

FSW = 0.0064

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT5G39770

Predicted

interaction prediction

FSW = 0.0099

Unknown

DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G24190

Predicted

interaction prediction

FSW = 0.0110

Unknown

SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR
AT5G06600

Predicted

interaction prediction

FSW = 0.0107

Unknown

UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454