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AT5G27720 - ( emb1644 (embryo defective 1644) )

122 Proteins interacs with AT5G27720

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G07590	Predicted Affinity Capture-MS	FSW = 0.1602	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840	Predicted Affinity Capture-MS	FSW = 0.2265	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960	Predicted Co-purification Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2402	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G20020	Predicted Affinity Capture-MS	FSW = 0.0073	Class C: nucleus	RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G12780	Predicted Protein-RNA	FSW = 0.0614	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT5G64270	Predicted Affinity Capture-MS	FSW = 0.1767	Class C: nucleus	SPLICING FACTOR PUTATIVE
AT2G44680	Predicted interaction prediction two hybrid interologs mapping	FSW = 0.0276	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G08290	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2975	Class C: nucleus	YLS8 CATALYTIC
AT4G29390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0415	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G23930	Predicted Affinity Capture-MS	FSW = 0.2272	Class C: nucleus	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT3G11500	Predicted interaction prediction	FSW = 0.1998	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT1G79020	Predicted Affinity Capture-MS	FSW = 0.0547	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT2G38810	Predicted Phenotypic Enhancement	FSW = 0.0163	Class C: nucleus	HTA8 (HISTONE H2A 8) DNA BINDING
AT2G47640	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1972	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT1G20580	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2736	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2544	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G04510	Predicted Co-purification	FSW = 0.1500	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G24490	Predicted Affinity Capture-MS	FSW = 0.0193	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT4G34430	Predicted Affinity Capture-MS	FSW = 0.0557	Class C: nucleus	CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G41500	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2401	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT2G36740	Predicted two hybrid	FSW = 0.0225	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G43810	Predicted interaction prediction two hybrid two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping	FSW = 0.1702	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G21190	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS in vitro Affinity Capture-Western	FSW = 0.1701	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76860	Predicted interaction prediction in vitro Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interologs mapping Co-expression	FSW = 0.2456	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30330	Predicted two hybrid Affinity Capture-MS	FSW = 0.2305	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G03330	Predicted two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping interaction prediction	FSW = 0.3237	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT3G17590	Predicted two hybrid interaction prediction	FSW = 0.0057	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT3G14080	Predicted Affinity Capture-MS in vitro	FSW = 0.0543	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G59810	Predicted in vitro Affinity Capture-MS	FSW = 0.1338	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120	Predicted interaction prediction two hybrid two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interologs mapping in vitro	FSW = 0.1541	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870	Predicted two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Colocalization interologs mapping in vitro interaction prediction Co-expression	FSW = 0.1758	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G65700	Predicted in vitro Co-expression	FSW = 0.0684	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted interaction prediction two hybrid two hybrid in vitro Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping Co-expression	FSW = 0.2118	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT2G33120	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0999	Unknown	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT1G49240	Predicted Synthetic Lethality	FSW = 0.0037	Unknown	ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G09590	Predicted Phenotypic Enhancement	FSW = 0.0084	Unknown	MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT4G31490	Predicted Affinity Capture-MS	FSW = 0.0229	Unknown	COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT2G01690	Predicted two hybrid interaction prediction	FSW = 0.0020	Unknown	BINDING
AT3G62870	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0237	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G65540	Predicted Affinity Capture-MS	FSW = 0.0044	Unknown	CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT2G33340	Predicted Co-purification	FSW = 0.1558	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2270	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT3G55200	Predicted Affinity Capture-MS	FSW = 0.1052	Unknown	SPLICING FACTOR PUTATIVE
AT5G25400	Predicted Affinity Capture-MS	FSW = 0.0898	Unknown	PHOSPHATE TRANSLOCATOR-RELATED
AT2G25140	Predicted Affinity Capture-MS	FSW = 0.0308	Unknown	CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G10070	Predicted Affinity Capture-MS	FSW = 0.0550	Unknown	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT3G12110	Predicted Synthetic Lethality	FSW = 0.0082	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G11680	Predicted Synthetic Lethality	FSW = 0.0035	Unknown	CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT3G55810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0688	Unknown	PYRUVATE KINASE PUTATIVE
AT3G11730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0406	Unknown	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT1G62020	Predicted interaction prediction two hybrid	FSW = 0.0243	Unknown	COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE
AT1G07110	Predicted interaction prediction two hybrid	FSW = 0.0183	Unknown	F2KP (FRUCTOSE-26-BISPHOSPHATASE) FRUCTOSE-26-BISPHOSPHATE 2-PHOSPHATASE
AT1G02520	Predicted two hybrid	FSW = 0.0187	Unknown	PGP11 (P-GLYCOPROTEIN 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G13320	Predicted Affinity Capture-MS	FSW = 0.0273	Unknown	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G47000	Predicted two hybrid interaction prediction	FSW = 0.0272	Unknown	ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE
AT2G17420	Predicted Affinity Capture-MS	FSW = 0.0092	Unknown	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) THIOREDOXIN-DISULFIDE REDUCTASE
AT2G13650	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0301	Unknown	GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER
AT5G02730	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0497	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G31470	Predicted Affinity Capture-MS	FSW = 0.0300	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G14580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0247	Unknown	ATPRB1
AT3G10090	Predicted two hybrid interologs mapping interaction prediction	FSW = 0.0136	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28A)
AT1G62800	Predicted Phenotypic Enhancement	FSW = 0.0100	Unknown	ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT5G05710	Predicted two hybrid	FSW = 0.0256	Unknown	PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEIN
AT1G02170	Predicted Phenotypic Suppression	FSW = 0.0142	Unknown	AMC1 (METACASPASE 1) CYSTEINE-TYPE ENDOPEPTIDASE
AT1G06830	Predicted Affinity Capture-MS	FSW = 0.0211	Unknown	GLUTAREDOXIN FAMILY PROTEIN
AT1G14640	Predicted Affinity Capture-MS	FSW = 0.2484	Unknown	SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G26140	Predicted Affinity Capture-MS	FSW = 0.1741	Unknown	UNKNOWN PROTEIN
AT1G31170	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0395	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G49760	Predicted Affinity Capture-MS	FSW = 0.0361	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G59890	Predicted two hybrid	FSW = 0.0090	Unknown	SNL5 (SIN3-LIKE 5)
AT1G60170	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2991	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G78580	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0089	Unknown	ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE) ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G03690	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0419	Unknown	COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G22040	Predicted Affinity Capture-MS	FSW = 0.0646	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G32600	Predicted two hybrid interaction prediction	FSW = 0.1789	Unknown	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT2G33560	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0331	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT3G05760	Predicted Affinity Capture-MS	FSW = 0.1201	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G11910	Predicted Affinity Capture-MS	FSW = 0.0107	Unknown	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G16565	Predicted Affinity Capture-MS	FSW = 0.0229	Unknown	ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G45190	Predicted Affinity Capture-MS	FSW = 0.0110	Unknown	SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT3G55020	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0850	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G55220	Predicted Affinity Capture-MS	FSW = 0.1780	Unknown	SPLICING FACTOR PUTATIVE
AT3G60240	Predicted Affinity Capture-MS	FSW = 0.0215	Unknown	EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR
AT4G00660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0789	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2346	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G04950	Predicted Affinity Capture-MS	FSW = 0.0115	Unknown	THIOREDOXIN FAMILY PROTEIN
AT4G29640	Predicted Affinity Capture-MS	FSW = 0.0520	Unknown	CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE
AT4G30870	Predicted two hybrid	FSW = 0.0035	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT5G03850	Predicted two hybrid	FSW = 0.0420	Unknown	40S RIBOSOMAL PROTEIN S28 (RPS28B)
AT5G06160	Predicted Affinity Capture-MS	FSW = 0.1778	Unknown	ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13010	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0663	Unknown	EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G13570	Predicted interaction prediction two hybrid	FSW = 0.0351	Unknown	DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G20560	Predicted Affinity Capture-MS	FSW = 0.0463	Unknown	BETA-13-GLUCANASE PUTATIVE
AT1G53900	Predicted Affinity Capture-MS	FSW = 0.0481	Unknown	GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G56090	Predicted Affinity Capture-MS	FSW = 0.0143	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G66810	Predicted Affinity Capture-MS	FSW = 0.0982	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G06040	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0269	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0747	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G35390	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0366	Unknown	RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G37840	Predicted biochemical	FSW = 0.0065	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT3G12200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0323	Unknown	ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18660	Predicted synthetic growth defect	FSW = 0.0494	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G62770	Predicted Affinity Capture-MS	FSW = 0.0085	Unknown	ATATG18A
AT4G14670	Predicted Affinity Capture-MS	FSW = 0.1685	Unknown	CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G14050	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0372	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G15070	Predicted Affinity Capture-MS	FSW = 0.0171	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G26110	Predicted Affinity Capture-MS	FSW = 0.0254	Unknown	ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G27970	Predicted interologs mapping Phenotypic Enhancement	FSW = 0.0068	Unknown	BINDING
AT5G46150	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement	FSW = 0.0168	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT5G67380	Predicted Affinity Capture-MS	FSW = 0.0152	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT5G37830	Predicted Affinity Capture-MS	FSW = 0.0858	Unknown	OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G65180	Predicted two hybrid interaction prediction	FSW = 0.0058	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT4G31480	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0163	Unknown	COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE
AT1G16980	Predicted Affinity Capture-MS	FSW = 0.0079	Unknown	ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT2G45810	Predicted Affinity Capture-MS	FSW = 0.0419	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G22760	Predicted Affinity Capture-MS	FSW = 0.0412	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT5G15770	Predicted interaction prediction interologs mapping	FSW = 0.0928	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT1G10450	Predicted two hybrid	FSW = 0.0033	Unknown	SNL6 (SIN3-LIKE 6)
AT3G26990	Predicted two hybrid	FSW = 0.0064	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT5G39770	Predicted interaction prediction	FSW = 0.0099	Unknown	DNA BINDING / ENDONUCLEASE/ NUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G24190	Predicted interaction prediction	FSW = 0.0110	Unknown	SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR
AT5G06600	Predicted interaction prediction	FSW = 0.0107	Unknown	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT5G27720 - ( emb1644 (embryo defective 1644) )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown