Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G24490 - ( RPA2 (REPLICON PROTEIN A2) protein binding )

92 Proteins interacs with AT2G24490
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G06510

Experimental

two hybrid

Affinity Capture-Western

FSW = 0.1478

Class A:

nucleus

Class B:

unclear

Class D:

nucleus (p = 0.78)

 RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT2G36490

Experimental

two hybrid

fluorescence acceptor donor pair

in vitro

FSW = 0.0103

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 DML1 (DEMETER-LIKE 1) DNA N-GLYCOSYLASE/ DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE/ PROTEIN BINDING
AT5G43530

Predicted

Phenotypic Enhancement

FSW = 0.0905

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT1G35160

Predicted

synthetic growth defect

FSW = 0.0196

Class C:

nucleus

 GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G44680

Predicted

Phenotypic Enhancement

FSW = 0.0480

Class C:

nucleus

 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G26720

Predicted

Phenotypic Suppression

FSW = 0.1004

Class C:

nucleus

 PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G02070

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0323

Class C:

nucleus

 MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING
AT4G25630

Predicted

Synthetic Lethality

Shared biological function

Co-expression

FSW = 0.0055

Class C:

nucleus

 FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G44900

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.1366

Class C:

nucleus

 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE
AT2G43810

Predicted

Phenotypic Suppression

FSW = 0.1208

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT5G64630

Predicted

Phenotypic Enhancement

FSW = 0.0741

Class C:

nucleus

 FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G19120

Predicted

Phenotypic Suppression

FSW = 0.0710

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G27720

Predicted

Affinity Capture-MS

FSW = 0.0193

Class C:

nucleus

 EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G06960

Predicted

Affinity Capture-MS

FSW = 0.0095

Class C:

nucleus

 SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT5G45400

Predicted

in vivo

in vitro

FSW = 0.0975

Class C:

nucleus

 REPLICATION PROTEIN PUTATIVE
AT2G47620

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0831

Class C:

nucleus

 ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G13370

Predicted

Phenotypic Enhancement

FSW = 0.1021

Class C:

nucleus

 CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G20010

Predicted

Phenotypic Enhancement

FSW = 0.0276

Class C:

nucleus

 SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G37470

Predicted

Affinity Capture-MS

FSW = 0.0200

Class C:

nucleus

 HISTONE H2B PUTATIVE
AT3G19210

Predicted

Phenotypic Enhancement

FSW = 0.1061

Class C:

nucleus

 ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G08630

Predicted

Phenotypic Suppression

FSW = 0.0947

Class C:

nucleus

 DDT DOMAIN-CONTAINING PROTEIN
AT5G18620

Predicted

Phenotypic Suppression

FSW = 0.0626

Class C:

nucleus

 CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT4G01370

Predicted

Phenotypic Enhancement

FSW = 0.0291

Unknown

 ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT3G08530

Predicted

two hybrid

FSW = 0.0079

Unknown

 CLATHRIN HEAVY CHAIN PUTATIVE
AT3G02520

Predicted

synthetic growth defect

FSW = 0.0740

Unknown

 GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G18640

Predicted

Phenotypic Enhancement

FSW = 0.0469

Unknown

 PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE
AT5G25400

Predicted

Affinity Capture-MS

FSW = 0.0054

Unknown

 PHOSPHATE TRANSLOCATOR-RELATED
AT4G26110

Predicted

Phenotypic Suppression

FSW = 0.0258

Unknown

 NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT1G60740

Predicted

interaction prediction

FSW = 0.0375

Unknown

 PEROXIREDOXIN TYPE 2 PUTATIVE
AT5G19180

Predicted

Phenotypic Suppression

FSW = 0.0220

Unknown

 ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT2G20420

Predicted

two hybrid

FSW = 0.0070

Unknown

 SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT5G57450

Predicted

Phenotypic Enhancement

FSW = 0.1283

Unknown

 XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G03730

Predicted

two hybrid

FSW = 0.0020

Unknown

 CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT2G37560

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.1132

Unknown

 ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT5G40820

Predicted

two hybrid

biochemical

biochemical

biochemical

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0796

Unknown

 ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G38470

Predicted

Phenotypic Enhancement

FSW = 0.0315

Unknown

 DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20850

Predicted

Phenotypic Enhancement

two hybrid

FSW = 0.0954

Unknown

 ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT2G01120

Predicted

two hybrid

FSW = 0.1177

Unknown

 ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING
AT2G07690

Predicted

two hybrid

FSW = 0.0507

Unknown

 MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G16440

Predicted

two hybrid

FSW = 0.1022

Unknown

 DNA REPLICATION LICENSING FACTOR PUTATIVE
AT1G55460

Predicted

co-fractionation

Co-fractionation

FSW = 0.0550

Unknown

 KIN17 DNA-BINDING PROTEIN-RELATED
AT3G18630

Predicted

in vitro

two hybrid

Affinity Capture-MS

FSW = 0.0156

Unknown

 URACIL DNA GLYCOSYLASE FAMILY PROTEIN
AT4G12620

Predicted

two hybrid

FSW = 0.0489

Unknown

 ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G29910

Predicted

two hybrid

FSW = 0.0435

Unknown

 ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G46280

Predicted

two hybrid

FSW = 0.0529

Unknown

 DNA REPLICATION LICENSING FACTOR PUTATIVE
AT1G04170

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0030

Unknown

 EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G05910

Predicted

Phenotypic Enhancement

FSW = 0.0694

Unknown

 CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G23260

Predicted

Phenotypic Enhancement

FSW = 0.0436

Unknown

 MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.0548

Unknown

 TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.0308

Unknown

 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G65970

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

 TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2) ANTIOXIDANT/ OXIDOREDUCTASE
AT1G08840Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0676

Unknown

 EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G10580

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0132

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G79890

Predicted

Phenotypic Enhancement

FSW = 0.1181

Unknown

 HELICASE-RELATED
AT1G80710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0202

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G14880

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT2G23070

Predicted

Phenotypic Suppression

FSW = 0.0271

Unknown

 CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0142

Unknown

 ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT3G02820

Predicted

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.1503

Unknown

 ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.0658

Unknown

 SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G42660

Predicted

Phenotypic Enhancement

FSW = 0.1641

Unknown

 NUCLEOTIDE BINDING
AT5G09230

Predicted

Phenotypic Enhancement

FSW = 0.0373

Unknown

 SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G27740

Predicted

Synthetic Lethality

Co-expression

FSW = 0.1111

Unknown

 EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G41880

Predicted

Colocalization

Co-expression

FSW = 0.1969

Unknown

 POLA3 DNA PRIMASE
AT5G43710

Predicted

Affinity Capture-MS

FSW = 0.0077

Unknown

 GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.0378

Unknown

 ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT2G44580

Predicted

Phenotypic Enhancement

FSW = 0.1368

Unknown

 PROTEIN BINDING / ZINC ION BINDING
AT3G06670

Predicted

Phenotypic Suppression

FSW = 0.0478

Unknown

 BINDING
AT3G12200

Predicted

Synthetic Rescue

FSW = 0.0099

Unknown

 ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1100

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G46960Predicted

Phenotypic Suppression

FSW = 0.0551

Unknown

 ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT4G04210

Predicted

Phenotypic Suppression

FSW = 0.0474

Unknown

 PUX4 PROTEIN BINDING
AT4G25120Predicted

Phenotypic Suppression

FSW = 0.1304

Unknown

 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G38630

Predicted

Phenotypic Enhancement

FSW = 0.0478

Unknown

 RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02310

Predicted

Phenotypic Suppression

FSW = 0.0236

Unknown

 PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G02880

Predicted

Phenotypic Enhancement

FSW = 0.0117

Unknown

 UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G10390Predicted

Phenotypic Enhancement

FSW = 0.0474

Unknown

 HISTONE H3
AT5G10790

Predicted

Phenotypic Enhancement

FSW = 0.0857

Unknown

 UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G15400

Predicted

Phenotypic Enhancement

FSW = 0.0485

Unknown

 U-BOX DOMAIN-CONTAINING PROTEIN
AT5G26680

Predicted

Phenotypic Enhancement

FSW = 0.1266

Unknown

 ENDONUCLEASE PUTATIVE
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0343

Unknown

 BINDING
AT5G59490

Predicted

Affinity Capture-MS

FSW = 0.0194

Unknown

 HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT5G66100

Predicted

Phenotypic Enhancement

FSW = 0.0329

Unknown

 LA DOMAIN-CONTAINING PROTEIN
AT1G65990

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

 TYPE 2 PEROXIREDOXIN-RELATED / THIOL SPECIFIC ANTIOXIDANT / MAL ALLERGEN FAMILY PROTEIN
AT4G19110

Predicted

biochemical

biochemical

FSW = 0.0188

Unknown

 PROTEIN KINASE PUTATIVE
AT2G27960

Predicted

two hybrid

Shared biological function

Co-expression

FSW = 0.0362

Unknown

 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) CYCLIN-DEPENDENT PROTEIN KINASE/ PROTEIN BINDING
AT3G61150

Predicted

two hybrid

FSW = 0.0244

Unknown

 HDG1 (HOMEODOMAIN GLABROUS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT5G45190

Predicted

two hybrid

FSW = 0.0227

Unknown

 CYCLIN FAMILY PROTEIN
AT5G48630

Predicted

two hybrid

FSW = 0.0377

Unknown

 CYCLIN FAMILY PROTEIN
AT2G16940

Predicted

two hybrid

Co-expression

FSW = 0.0112

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G63000

Predicted

two hybrid

FSW = 0.0221

Unknown

 NPL41 (NPL4-LIKE PROTEIN 1)
AT5G55130

Predicted

two hybrid

Co-expression

FSW = 0.0044

Unknown

 CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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