Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37560 - ( ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA replication origin binding / protein binding )
66 Proteins interacs with AT2G37560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G27030 | Experimentalfar western blotting | FSW = 0.0043
| Class D:nucleus (p = 0.78) | CAM5 (CALMODULIN 5) CALCIUM ION BINDING |
AT1G26840 | Experimentalpull downtwo hybrid | FSW = 0.2804
| Class D:nucleus (p = 0.78) | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT4G29910 | Experimentalcoimmunoprecipitationpull down | FSW = 0.1241
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT4G12620 | Experimentalcoimmunoprecipitationpull down | FSW = 0.3546
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G16690 | Experimentalpull downtwo hybridcoimmunoprecipitation | FSW = 0.1927
| Unknown | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) PROTEIN BINDING |
AT2G01120 | Experimentalcoimmunoprecipitation | FSW = 0.2616
| Unknown | ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) PROTEIN BINDING |
AT4G14700 | Experimentalcoimmunoprecipitation | FSW = 0.0992
| Unknown | ORC1A (ORIGIN RECOGNITION COMPLEX 1) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | HISTONE H4 |
AT1G09770 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0259
| Unknown | HISTONE H4 |
AT1G07790 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0220
| Unknown | HTB1 DNA BINDING |
AT5G58230 | PredictedSynthetic Lethality | FSW = 0.0732
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT3G48750 | Predictedbiochemicalbiochemicalbiochemicalinteraction prediction | FSW = 0.0115
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G30110 | PredictedSynthetic Rescue | FSW = 0.0129
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT1G48050 | Predictedin vivo | FSW = 0.0105
| Unknown | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.0504
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.1132
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1122
| Unknown | REPLICATION PROTEIN-RELATED |
AT1G44900 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-Westernin vitroin vivoCo-expression | FSW = 0.2786
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G45400 | Predictedtwo hybridCo-expression | FSW = 0.1855
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT5G61000 | Predictedtwo hybrid | FSW = 0.1443
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT4G02060 | Predictedtwo hybridSynthetic LethalityAffinity Capture-MSCo-expression | FSW = 0.3053
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G37990 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0262
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT5G20730 | PredictedSynthetic Lethality | FSW = 0.0129
| Unknown | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT1G19120 | PredictedSynthetic Lethality | FSW = 0.0930
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G67630 | PredictedAffinity Capture-Western | FSW = 0.0334
| Unknown | POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0759
| Unknown | ATEB1A MICROTUBULE BINDING |
AT5G66130 | PredictedSynthetic Lethality | FSW = 0.0949
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G19910 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | SOH1 FAMILY PROTEIN |
AT5G40820 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0844
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT1G07270 | Predictedtwo hybridsynthetic growth defectReconstituted ComplexAffinity Capture-WesternReconstituted ComplexAffinity Capture-Westernin vitrointeraction predictionCo-expression | FSW = 0.1930
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT2G07690 | Predictedsynthetic growth defecttwo hybridCo-expression | FSW = 0.2127
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G16440 | PredictedSynthetic Lethalitytwo hybridinteraction predictionCo-expression | FSW = 0.3572
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G20980 | Predictedin vivoin vitrotwo hybridAffinity Capture-MSAffinity Capture-Westernsynthetic growth defect | FSW = 0.1880
| Unknown | MCM10 |
AT2G29680 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0359
| Unknown | CDC6 (CELL DIVISION CONTROL 6) |
AT3G25100 | Predictedtwo hybridSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.2769
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G54180 | PredictedAffinity Capture-MS | FSW = 0.0114
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT5G44635 | Predictedtwo hybrid | FSW = 0.1445
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G41350 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1002
| Unknown | UNKNOWN PROTEIN |
AT1G04730 | PredictedSynthetic LethalityCo-expression | FSW = 0.0930
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0316
| Unknown | H2AXA DNA BINDING |
AT1G10930 | PredictedPhenotypic Enhancement | FSW = 0.0698
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G26450 | PredictedSynthetic Lethality | FSW = 0.0033
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G61040 | PredictedSynthetic Lethality | FSW = 0.0156
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | PredictedSynthetic Lethality | FSW = 0.0578
| Unknown | SGA2 |
AT2G31580 | Predictedtwo hybridinterologs mappingAffinity Capture-Western | FSW = 0.0193
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S TRNAHIS GUANYLYLTRANSFERASE (INTERPROIPR007537) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G323201) HAS 640 BLAST HITS TO 336 PROTEINS IN 155 SPECIES ARCHAE - 65 BACTERIA - 47 METAZOA - 212 FUNGI - 176 PLANTS - 43 VIRUSES - 2 OTHER EUKARYOTES - 95 (SOURCE NCBI BLINK) |
AT1G80410 | PredictedSynthetic Lethality | FSW = 0.0304
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT4G16970 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.1911
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14520 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0131
| Unknown | PESCADILLO-RELATED |
AT5G56740 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic EnhancementCo-expression | FSW = 0.0962
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT2G44580 | PredictedSynthetic Lethality | FSW = 0.1105
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | PredictedSynthetic LethalityCo-expression | FSW = 0.1540
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic LethalityCo-expression | FSW = 0.1157
| Unknown | NUCLEOTIDE BINDING |
AT4G25120 | PredictedSynthetic Lethality | FSW = 0.0604
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G09230 | PredictedSynthetic Lethality | FSW = 0.0143
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G27490 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G41770 | PredictedAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.0109
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G65180 | PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT3G13210 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0133
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G09460 | PredictedSynthetic Lethality | FSW = 0.0039
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT2G39805 | PredictedSynthetic Lethality | FSW = 0.0157
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT4G11080 | PredictedSynthetic LethalityCo-expression | FSW = 0.0321
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G26990 | PredictedSynthetic Lethality | FSW = 0.0410
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT3G19420 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0122
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454