Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G02820 - ( zinc knuckle (CCHC-type) family protein )
89 Proteins interacs with AT3G02820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0528
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0577
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G06510 | PredictedPhenotypic Enhancement | FSW = 0.1519
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT5G43530 | Predictedsynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.2081
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT5G16630 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0450
| Unknown | RAD4 DAMAGED DNA BINDING |
AT5G58230 | PredictedPhenotypic Enhancement | FSW = 0.0297
| Unknown | MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0720
| Unknown | SEC22 TRANSPORTER |
AT3G01310 | Predictedsynthetic growth defect | FSW = 0.0933
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT2G20140 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT4G29510 | Predictedinteraction predictionCo-expression | FSW = 0.0105
| Unknown | PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE |
AT4G26720 | PredictedSynthetic Lethality | FSW = 0.1698
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G05190 | PredictedSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.2337
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.3123
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedSynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.1503
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G03870 | PredictedSynthetic Lethality | FSW = 0.1300
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G45400 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0808
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT5G61000 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0612
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT2G35670 | PredictedSynthetic Lethality | FSW = 0.1587
| Unknown | FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR |
AT4G02060 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0727
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G22750 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1743
| Unknown | RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.2213
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G19210 | Predictedsynthetic growth defect | FSW = 0.3214
| Unknown | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G20010 | PredictedPhenotypic Enhancement | FSW = 0.0518
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT5G26710 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0288
| Unknown | GLUTAMATE-TRNA LIGASE PUTATIVE / GLUTAMYL-TRNA SYNTHETASE PUTATUVE / GLURS PUTATIVE |
AT3G47690 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.2762
| Unknown | ATEB1A MICROTUBULE BINDING |
AT3G02580 | PredictedPhenotypic Enhancement | FSW = 0.0245
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT2G31970 | Predictedsynthetic growth defect | FSW = 0.2690
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G57450 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.4211
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT5G66130 | Predictedsynthetic growth defectSynthetic LethalityPhenotypic Enhancement | FSW = 0.2542
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G25980 | PredictedPhenotypic Suppression | FSW = 0.1286
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | Predictedsynthetic growth defect | FSW = 0.1963
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G63960 | PredictedSynthetic LethalityCo-expression | FSW = 0.0729
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G37560 | PredictedSynthetic LethalityCo-expression | FSW = 0.1540
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G54260 | Predictedsynthetic growth defect | FSW = 0.2875
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G36200 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.2221
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT5G38470 | PredictedPhenotypic Enhancement | FSW = 0.0894
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G20850 | Predictedsynthetic growth defect | FSW = 0.2398
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G09230 | Predictedtwo hybridtwo hybrid | FSW = 0.0109
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G52910 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0110
| Unknown | ATIM (TIMELESS) |
AT1G04020 | Predictedsynthetic growth defect | FSW = 0.2642
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G04730 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementSynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.4355
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G08780 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1558
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G10930 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethalitysynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.2174
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G29990 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1786
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.2459
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.1655
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | Predictedsynthetic growth defect | FSW = 0.2016
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G11000 | Predictedsynthetic growth defect | FSW = 0.0789
| Unknown | ATMAK10 ACETYLTRANSFERASE |
AT2G18290 | PredictedSynthetic Lethality | FSW = 0.0607
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT2G19560 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0079
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
AT2G38130 | Predictedsynthetic growth defect | FSW = 0.0658
| Unknown | ATMAK3 N-ACETYLTRANSFERASE |
AT2G44580 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.4542
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0166
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT1G07270 | PredictedSynthetic RescueCo-expression | FSW = 0.1005
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G08840 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.1617
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0625
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.1522
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G64520 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT3G25100 | PredictedSynthetic LethalityCo-expression | FSW = 0.1962
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G42660 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic EnhancementCo-expression | FSW = 0.4615
| Unknown | NUCLEOTIDE BINDING |
AT4G25120 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic EnhancementCo-expression | FSW = 0.2735
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G27180 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2499
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.1573
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.1742
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.2194
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G19820 | Predictedtwo hybridinteraction prediction | FSW = 0.0094
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G26680 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2950
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G43500 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1395
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G45140 | PredictedPhenotypic Enhancement | FSW = 0.0105
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.1842
| Unknown | GAS41 PROTEIN BINDING |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT3G22480 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1527
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G04210 | Predictedsynthetic growth defect | FSW = 0.1214
| Unknown | PUX4 PROTEIN BINDING |
AT4G11920 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.2370
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT4G29040 | PredictedSynthetic Lethality | FSW = 0.0396
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT5G15070 | Predictedsynthetic growth defect | FSW = 0.0230
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G20600 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN PRERIBOSOME SMALL SUBUNIT PRECURSOR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOLAR NOP52 (INTERPROIPR010301) HAS 444 BLAST HITS TO 431 PROTEINS IN 151 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 196 FUNGI - 114 PLANTS - 27 VIRUSES - 0 OTHER EUKARYOTES - 97 (SOURCE NCBI BLINK) |
AT5G23290 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1734
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.1818
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G27970 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1408
| Unknown | BINDING |
AT5G39900 | Predictedsynthetic growth defect | FSW = 0.0242
| Unknown | GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.0838
| Unknown | POLA3 DNA PRIMASE |
AT5G49510 | PredictedSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1818
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G63920 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction predictionCo-expression | FSW = 0.2432
| Unknown | DNA TOPOISOMERASE III ALPHA PUTATIVE |
AT2G23420 | Predictedsynthetic growth defect | FSW = 0.1600
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT1G14400 | Predictedsynthetic growth defect | FSW = 0.1240
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT3G07120 | Predictedsynthetic growth defectSynthetic Lethalityinteraction prediction | FSW = 0.1964
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16270 | PredictedSynthetic Lethality | FSW = 0.1377
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT5G54670 | Predictedinteraction prediction | FSW = 0.1681
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454