Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G23290 - ( PDF5 (PREFOLDIN 5) unfolded protein binding )

133 Proteins interacs with AT5G23290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

interologs mapping

FSW = 0.0828

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G29130

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0397

Unknown

HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT1G20010

Predicted

Synthetic Lethality

FSW = 0.0923

Unknown

TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G04820Predicted

interologs mapping

FSW = 0.0776

Unknown

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G07770

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0116

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G28715

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0167

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT3G28710

Predicted

Synthetic Lethality

FSW = 0.0207

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT5G45130

Predicted

Phenotypic Suppression

FSW = 0.0337

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT4G01320

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0343

Unknown

ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT3G60840

Predicted

interaction prediction

Synthetic Lethality

FSW = 0.1867

Unknown

MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)
AT2G01690

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0706

Unknown

BINDING
AT3G22110

Predicted

Phenotypic Suppression

Affinity Capture-MS

FSW = 0.0749

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G50460

Predicted

Synthetic Lethality

FSW = 0.0632

Unknown

HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G02520

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0676

Unknown

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G33650

Predicted

Affinity Capture-MS

FSW = 0.0045

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G59690Predicted

Phenotypic Suppression

FSW = 0.0722

Unknown

HISTONE H4
AT3G55400

Predicted

two hybrid

two hybrid

FSW = 0.0036

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G16880

Predicted

Affinity Capture-MS

FSW = 0.0047

Unknown

URIDYLYLTRANSFERASE-RELATED
AT5G16630

Predicted

Phenotypic Suppression

FSW = 0.0184

Unknown

RAD4 DAMAGED DNA BINDING
AT3G11630

Predicted

Affinity Capture-MS

FSW = 0.0352

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G71440

Predicted

interaction prediction

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2165

Unknown

PFI (PFIFFERLING)
AT1G35160

Predicted

Synthetic Lethality

FSW = 0.0405

Unknown

GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G12250

Predicted

Synthetic Lethality

FSW = 0.1152

Unknown

TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G14120

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0244

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT3G61650

Predicted

interaction prediction

Synthetic Lethality

Affinity Capture-Western

FSW = 0.1104

Unknown

TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G59820

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0214

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT5G23630

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0729

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT4G29810

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0054

Unknown

ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE
AT1G13210

Predicted

Synthetic Lethality

FSW = 0.0194

Unknown

ACAL (AUTOINHIBITED CA2+/ATPASE II) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / CALMODULIN BINDING
AT1G32090

Predicted

interaction prediction

FSW = 0.0097

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G11960

Predicted

Synthetic Lethality

FSW = 0.0331

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF221 (INTERPROIPR003864) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED (TAIRAT1G623201) HAS 746 BLAST HITS TO 706 PROTEINS IN 111 SPECIES ARCHAE - 0 BACTERIA - 4 METAZOA - 131 FUNGI - 370 PLANTS - 224 VIRUSES - 0 OTHER EUKARYOTES - 17 (SOURCE NCBI BLINK)
AT1G73180

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0178

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT2G44680

Predicted

Phenotypic Suppression

FSW = 0.0742

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G26720

Predicted

Phenotypic Suppression

FSW = 0.0477

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G05190

Predicted

Synthetic Lethality

Co-expression

FSW = 0.2448

Unknown

ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT5G67270

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.2696

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G38810

Predicted

interaction prediction

Co-expression

FSW = 0.1438

Unknown

HTA8 (HISTONE H2A 8) DNA BINDING
AT3G12810

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1799

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G16980

Predicted

Synthetic Lethality

FSW = 0.0298

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G35910

Predicted

Phenotypic Suppression

FSW = 0.0610

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT4G29390Predicted

Affinity Capture-MS

FSW = 0.0058

Unknown

40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT1G02740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1126

Unknown

CHROMATIN BINDING
AT2G13370

Predicted

Phenotypic Suppression

FSW = 0.1173

Unknown

CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2014

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1045

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G35530

Predicted

Affinity Capture-MS

FSW = 0.0055

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3C)
AT2G44950

Predicted

Phenotypic Suppression

FSW = 0.1282

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G15940

Predicted

two hybrid

FSW = 0.0175

Unknown

FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
AT1G72330

Predicted

Synthetic Lethality

FSW = 0.0376

Unknown

ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G14270

Predicted

interaction prediction

FSW = 0.0386

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT5G66020

Predicted

Phenotypic Suppression

FSW = 0.0609

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT1G14690

Predicted

Synthetic Lethality

FSW = 0.1633

Unknown

MAP65-7 (MICROTUBULE-ASSOCIATED PROTEIN 65-7)
AT3G47690

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.2333

Unknown

ATEB1A MICROTUBULE BINDING
AT1G57550

Predicted

Synthetic Lethality

FSW = 0.0527

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT5G41480

Predicted

Affinity Capture-MS

FSW = 0.0094

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT3G25980

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

Co-expression

FSW = 0.1620

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT5G19910

Predicted

Phenotypic Suppression

FSW = 0.1363

Unknown

SOH1 FAMILY PROTEIN
AT2G36200

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

FSW = 0.2608

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT3G22480

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.5125

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT1G29990

Predicted

interaction prediction

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-purification

Phenotypic Suppression

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.5557

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G04730Predicted

interaction prediction

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

Co-expression

FSW = 0.1750

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G05910

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1194

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G08780

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

interaction prediction

Co-expression

FSW = 0.6053

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G20610

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0248

Unknown

CYCB23 (CYCLIN B23) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G21710

Predicted

Phenotypic Enhancement

FSW = 0.0101

Unknown

OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G23260

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0902

Unknown

MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G29150

Predicted

Phenotypic Suppression

FSW = 0.0903

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G49540

Predicted

Phenotypic Enhancement

FSW = 0.0851

Unknown

NUCLEOTIDE BINDING
AT1G52740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1835

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G55915

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0515

Unknown

ZINC ION BINDING
AT1G61040

Predicted

Phenotypic Suppression

FSW = 0.1443

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G71790

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0151

Unknown

F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G79890

Predicted

interaction prediction

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1970

Unknown

HELICASE-RELATED
AT2G11000

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0695

Unknown

ATMAK10 ACETYLTRANSFERASE
AT2G17790

Predicted

Synthetic Lethality

FSW = 0.0514

Unknown

VPS35A (VPS35 HOMOLOG A)
AT2G22400

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0582

Unknown

NOL1/NOP2/SUN FAMILY PROTEIN
AT2G28390

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0474

Unknown

SAND FAMILY PROTEIN
AT2G29210

Predicted

Synthetic Lethality

FSW = 0.0429

Unknown

SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN
AT2G30410

Predicted

interaction prediction

Synthetic Lethality

interologs mapping

Phenotypic Enhancement

FSW = 0.1590

Unknown

KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT2G32850

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0217

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT2G33560

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.0956

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G38130

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0605

Unknown

ATMAK3 N-ACETYLTRANSFERASE
AT2G44580

Predicted

interaction prediction

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2212

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G45695

Predicted

Synthetic Lethality

FSW = 0.0553

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN RELATED MODIFIER 1 (INTERPROIPR015221) UBIQUITIN-RELATED MODIFIER 1 (INTERPROIPR017188) MOLYBDOPTERIN SYNTHASE/THIAMIN BIOSYNTHESIS SULPHUR CARRIER BETA-GRASP (INTERPROIPR016155) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G611131) HAS 238 BLAST HITS TO 238 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 72 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G05540

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOPLASM CONTAINS INTERPRO DOMAIN/S TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN (INTERPROIPR018105) TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR001983) MSS4/TRANSLATIONALLY CONTROLLED TUMOUR-ASSOCIATED TCTP (INTERPROIPR011323) TRANSLATIONALLY CONTROLLED TUMOUR PROTEIN CONSERVED SITE (INTERPROIPR018103) MSS4-LIKE (INTERPROIPR011057) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) (TAIRAT3G166401) HAS 640 BLAST HITS TO 640 PROTEINS IN 231 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 343 FUNGI - 110 PLANTS - 105 VIRUSES - 0 OTHER EUKARYOTES - 82 (SOURCE NCBI BLINK)
AT3G20800

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0642

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G21060

Predicted

Phenotypic Suppression

FSW = 0.1348

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22142

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1098

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22590

Predicted

Phenotypic Suppression

FSW = 0.1287

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G42660

Predicted

interaction prediction

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2792

Unknown

NUCLEOTIDE BINDING
AT3G47810

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0842

Unknown

MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G49880

Predicted

interologs mapping

FSW = 0.0132

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G50960

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0755

Unknown

PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT3G59020

Predicted

Affinity Capture-MS

FSW = 0.0082

Unknown

BINDING / PROTEIN TRANSPORTER
AT4G08500

Predicted

Synthetic Lethality

FSW = 0.0247

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G15930

Predicted

interaction prediction

Synthetic Lethality

FSW = 0.0694

Unknown

MICROTUBULE MOTOR
AT4G27180

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2386

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G27640

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0092

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT4G33240

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1517

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G38630

Predicted

Phenotypic Suppression

FSW = 0.0838

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT4G39050

Predicted

Synthetic Lethality

FSW = 0.1273

Unknown

KINESIN-RELATED PROTEIN (MKRP2)
AT5G02310

Predicted

Phenotypic Suppression

FSW = 0.0563

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.1495

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G19150

Predicted

Affinity Capture-Western

FSW = 0.0100

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19820

Predicted

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.0209

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.0073

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G44150

Predicted

Synthetic Lethality

Synthetic Lethality

interaction prediction

FSW = 0.1464

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G02820

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1734

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0879

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.1626

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G55380

Predicted

Phenotypic Enhancement

FSW = 0.0236

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT5G09740

Predicted

synthetic growth defect

FSW = 0.1613

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13780

Predicted

synthetic growth defect

Co-expression

FSW = 0.1503

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G45600

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.3072

Unknown

GAS41 PROTEIN BINDING
AT5G49510

Predicted

interaction prediction

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interologs mapping

Co-expression

FSW = 0.5738

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G55310

Predicted

Phenotypic Suppression

FSW = 0.0188

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G61150

Predicted

Phenotypic Suppression

FSW = 0.1160

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G48120

Predicted

Phenotypic Suppression

FSW = 0.1410

Unknown

BINDING
AT5G55130

Predicted

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.0503

Unknown

CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT5G67320

Predicted

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1449

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G16330

Predicted

Synthetic Lethality

FSW = 0.0448

Unknown

CYCB31 (CYCLIN B31) CYCLIN-DEPENDENT PROTEIN KINASE
AT2G18990

Predicted

Synthetic Lethality

FSW = 0.0605

Unknown

TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)
AT1G71010

Predicted

Synthetic Lethality

FSW = 0.1011

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT1G09000

Predicted

Synthetic Lethality

FSW = 0.0248

Unknown

ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE
AT1G75850

Predicted

Synthetic Lethality

FSW = 0.0450

Unknown

VPS35B (VPS35 HOMOLOG B)
AT5G16270

Predicted

Synthetic Lethality

FSW = 0.0962

Unknown

SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4)
AT2G18000

Predicted

Synthetic Lethality

FSW = 0.1532

Unknown

TAF14 (TBP-ASSOCIATED FACTOR 14)
AT3G16700

Predicted

two hybrid

FSW = 0.0239

Unknown

FUMARYLACETOACETATE HYDROLASE FAMILY PROTEIN
AT5G54670

Predicted

interaction prediction

FSW = 0.1855

Unknown

ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR
AT2G38905

Predicted

interaction prediction

FSW = 0.0693

Unknown

HYDROPHOBIC PROTEIN PUTATIVE / LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN PUTATIVE
AT1G54960

Predicted

interaction prediction

FSW = 0.0273

Unknown

ANP2 MAP KINASE KINASE KINASE/ KINASE
AT3G51310

Predicted

interaction prediction

FSW = 0.0450

Unknown

VPS35C (VPS35 HOMOLOG C)
AT4G37280

Predicted

interaction prediction

FSW = 0.0781

Unknown

MRG FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454