Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28390 - ( SAND family protein )
29 Proteins interacs with AT2G28390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.1371
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT5G19740 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
AT1G22740 | Predictedinterologs mapping | FSW = 0.2041
| Unknown | RABG3B GTP BINDING |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0304
| Unknown | BINDING |
AT1G27770 | Predictedinterologs mapping | FSW = 0.1020
| Unknown | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0265
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0125
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G16100 | Predictedinterologs mapping | FSW = 0.2857
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0769
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | Predictedinterologs mapping | FSW = 0.0392
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | PredictedAffinity Capture-MSSynthetic Lethalitysynthetic growth defect | FSW = 0.0093
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G29900 | Predictedinterologs mapping | FSW = 0.1099
| Unknown | ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0301
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G05170 | Predictedtwo hybridinteraction prediction | FSW = 0.0648
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G21710 | PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G54860 | Predictedtwo hybrid | FSW = 0.1394
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT1G12470 | Predictedtwo hybridinteraction prediction | FSW = 0.1433
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT1G79730 | PredictedPhenotypic Enhancement | FSW = 0.0654
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G04620 | Predictedinterologs mapping | FSW = 0.2198
| Unknown | CATION EFFLUX FAMILY PROTEIN |
AT2G27970 | PredictedPhenotypic Enhancement | FSW = 0.0198
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G49540 | PredictedPhenotypic Enhancement | FSW = 0.0832
| Unknown | NUCLEOTIDE BINDING |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.0089
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT4G15930 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0248
| Unknown | MICROTUBULE MOTOR |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.0132
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0629
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13780 | PredictedPhenotypic Suppression | FSW = 0.0366
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G23290 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0474
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.0138
| Unknown | POLA3 DNA PRIMASE |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.0513
| Unknown | PUX4 PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454