Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G16100 - ( ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP binding )
35 Proteins interacs with AT3G16100| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G18820
   | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6000
| Class C:plasma membranenucleus | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
| AT4G19640
| PredictedPhylogenetic profile method | FSW = 0.2774
| Class C:plasma membrane | ARA7 GTP BINDING |
| AT1G52280
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3029
| Class C:plasma membrane | ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING |
| AT1G49300
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.6667
| Class C:plasma membrane | RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING |
| AT3G56190
| Predictedco-fractionationCo-fractionation | FSW = 0.0140
| Class C:plasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT2G44610
| Predictedinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.2206
| Class C:plasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT1G07670
| Predictedinterologs mapping | FSW = 0.0443
| Class C:plasma membrane | CALCIUM-TRANSPORTING ATPASE |
| AT5G52640
| Predictedtwo hybridSynthetic Lethalitysynthetic growth defect | FSW = 0.0100
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G43130
| PredictedPhylogenetic profile method | FSW = 0.2190
| Class C:plasma membrane | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT4G29900
| Predictedinterologs mapping | FSW = 0.0640
| Class C:plasma membrane | ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
| AT5G45130
| PredictedPhylogenetic profile method | FSW = 0.3826
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
| AT4G09720
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2060
| Unknown | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
| AT1G22740
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5472
| Unknown | RABG3B GTP BINDING |
| AT1G79590
| Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.2420
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
| AT2G38020
| PredictedAffinity Capture-Western | FSW = 0.2400
| Unknown | VCL1 (VACUOLELESS 1) |
| AT2G30710
| Predictedbiochemicalinterologs mapping | FSW = 0.1115
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT2G21880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5453
| Unknown | ATRAB7A GTP BINDING |
| AT2G22290
| PredictedPhylogenetic profile method | FSW = 0.1778
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT5G64990
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4277
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
| AT5G03520
| PredictedGene fusion methodCo-expression | FSW = 0.3750
| Unknown | ATRAB8C GTP BINDING |
| AT3G54840
| PredictedPhylogenetic profile method | FSW = 0.1070
| Unknown | ARA6 GTP BINDING / GTPASE |
| AT3G59500
| PredictedReconstituted Complextwo hybridinteraction prediction | FSW = 0.2078
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
| AT2G05170
| PredictedAffinity Capture-Western | FSW = 0.0820
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
| AT5G50720
| PredictedAffinity Capture-Western | FSW = 0.0889
| Unknown | ATHVA22E |
| AT3G54860
| PredictedColocalizationAffinity Capture-Western | FSW = 0.1492
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
| AT1G12470
| PredictedAffinity Capture-Western | FSW = 0.1775
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
| AT2G04620 | Predictedinterologs mapping | FSW = 0.1876
| Unknown | CATION EFFLUX FAMILY PROTEIN |
| AT2G36300
| Predictedtwo hybrid | FSW = 0.1688
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT2G28390
| Predictedinterologs mapping | FSW = 0.2857
| Unknown | SAND FAMILY PROTEIN |
| AT3G22142
| PredictedAffinity Capture-MS | FSW = 0.0215
| Unknown | STRUCTURAL CONSTITUENT OF CELL WALL |
| AT5G09550
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridinteraction predictionEnriched domain pairCo-expression | FSW = 0.1846
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT5G10260
| PredictedSynthetic Lethality | FSW = 0.1071
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
| AT5G39620
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2400
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
| AT2G31680
| PredictedPhylogenetic profile method | FSW = 0.2262
| Unknown | ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING |
| AT3G09890
| PredictedGene fusion method | FSW = 0.2078
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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