Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79590 - ( SYP52 (SYNTAXIN OF PLANTS 52) SNAP receptor )
43 Proteins interacs with AT1G79590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G39510 | Experimentalcoimmunoprecipitation | FSW = 0.2707
| Class A:vacuoleClass B:golgiendoplasmic reticulumClass D:nucleus (p = 0.78)golgi (p = 0.04) | SGR4 (SHOOT GRAVITROPSIM 4) RECEPTOR |
AT5G16830 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2351
| Class A:vacuoleClass B:endoplasmic reticulumClass D:plastid (p = 0.78)nucleus (p = 0.78)golgi (p = 0.04) | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
AT5G46860 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2238
| Class A:vacuoleClass B:endoplasmic reticulumClass D:nucleus (p = 0.78) | VAM3 SNAP RECEPTOR |
AT1G28490 | ExperimentalAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.1512
| Class B:vacuolegolgiendoplasmic reticulumClass D:golgi (p = 0.04) | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT3G56190 | Predictedin vivoAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0964
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT2G44610 | Predictedinteraction prediction | FSW = 0.0456
| Class C:vacuole | RAB6A GTP BINDING / PROTEIN BINDING |
AT5G45130 | Predictedtwo hybrid | FSW = 0.1174
| Class C:vacuole | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT5G11150 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.1152
| Class C:vacuole | ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) |
AT4G04910 | Predictedin vivo | FSW = 0.0608
| Class C:vacuole | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G29100 | Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.2344
| Class C:vacuole | VTI13 SNARE BINDING / RECEPTOR |
AT2G38020 | PredictedAffinity Capture-Western | FSW = 0.2750
| Class C:vacuole | VCL1 (VACUOLELESS 1) |
AT5G26030 | Predictedtwo hybrid | FSW = 0.0057
| Unknown | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT5G26240 | Predictedtwo hybridinteraction prediction | FSW = 0.0928
| Unknown | CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT5G58060 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationinteraction prediction | FSW = 0.2238
| Unknown | YKT61 |
AT3G16100 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.2420
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT2G18260 | Predictedtwo hybrid | FSW = 0.0703
| Unknown | SYP112 (SYNTAXIN OF PLANTS 112) SNAP RECEPTOR |
AT5G08080 | Predictedin vitro | FSW = 0.0960
| Unknown | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0085
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G61290 | Predictedin vitroEnriched domain pairCo-expression | FSW = 0.0790
| Unknown | SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR |
AT4G20410 | Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.0497
| Unknown | GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN) BINDING / TRANSPORTER |
AT5G12370 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT1G62020 | Predictedin vivo | FSW = 0.0178
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT5G19450 | PredictedPhenotypic Enhancementtwo hybridtwo hybrid | FSW = 0.0317
| Unknown | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G05530 | Predictedtwo hybrid | FSW = 0.0071
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT1G74060 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT3G59500 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1423
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
AT2G05170 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0699
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT3G54860 | PredictedReconstituted ComplexAffinity Capture-WesternCo-purificationAffinity Capture-WesternReconstituted Complex | FSW = 0.1807
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
AT2G21390 | Predictedin vivo | FSW = 0.0454
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT1G08190 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2707
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT1G12470 | PredictedAffinity Capture-WesternAffinity Capture-WesternCo-purificationReconstituted Complex | FSW = 0.2017
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
AT5G09350 | PredictedSynthetic Lethality | FSW = 0.0333
| Unknown | PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.0081
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10260 | PredictedSynthetic Lethality | FSW = 0.0614
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G52590 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.1141
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT1G80510 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G36300 | Predictedtwo hybrid | FSW = 0.0849
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G58460 | Predictedtwo hybridtwo hybrid | FSW = 0.0216
| Unknown | ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) |
AT4G14305 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S MPV17/PMP22 (INTERPROIPR007248) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PMP22 (TAIRAT4G044701) HAS 957 BLAST HITS TO 957 PROTEINS IN 126 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 456 FUNGI - 286 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 51 (SOURCE NCBI BLINK) |
AT5G20350 | Predictedtwo hybrid | FSW = 0.0348
| Unknown | TIP1 (TIP GROWTH DEFECTIVE 1) S-ACYLTRANSFERASE/ ACYL BINDING |
AT5G27490 | Predictedtwo hybridtwo hybrid | FSW = 0.0790
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT1G36980 | Predictedinteraction prediction | FSW = 0.0497
| Unknown | UNKNOWN PROTEIN |
AT1G14250 | Predictedinteraction prediction | FSW = 0.0497
| Unknown | NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN / GDA1/CD39 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454