Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G74060 - ( 60S ribosomal protein L6 (RPL6B) )
105 Proteins interacs with AT1G74060| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G02090
   | PredictedAffinity Capture-MS | FSW = 0.0145
| Class C:nucleus | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
| AT3G04920
| PredictedAffinity Capture-MS | FSW = 0.4800
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S24 (RPS24A) |
| AT3G49910
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6562
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.4154
| Class C:nucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.3444
| Class C:nucleus | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09630
| PredictedAffinity Capture-MS | FSW = 0.2738
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.4969
| Class C:nucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G09200
| PredictedAffinity Capture-MS | FSW = 0.2245
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
| AT2G47610
| PredictedAffinity Capture-MS | FSW = 0.3796
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G67430
| PredictedAffinity Capture-MS | FSW = 0.4773
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.4007
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.4002
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT5G20290
| PredictedAffinity Capture-MS | FSW = 0.2574
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
| AT5G64270
| PredictedSynthetic Lethality | FSW = 0.0038
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT5G20010
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2630
| Class C:nucleus | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT2G27710
| PredictedAffinity Capture-MS | FSW = 0.4238
| Class C:nucleus | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.4491
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT5G39740
| PredictedAffinity Capture-MS | FSW = 0.1887
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT2G18260
| PredictedPhenotypic Enhancement | FSW = 0.0481
| Class C:nucleus | SYP112 (SYNTAXIN OF PLANTS 112) SNAP RECEPTOR |
| AT2G37190
| PredictedAffinity Capture-MS | FSW = 0.4093
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
| AT4G00100
| PredictedAffinity Capture-MS | FSW = 0.3825
| Class C:nucleus | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G34670
| PredictedAffinity Capture-MS | FSW = 0.3844
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S3A (RPS3AB) |
| AT3G06700
| PredictedAffinity Capture-MS | FSW = 0.3281
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L29 (RPL29A) |
| AT4G26600
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1557
| Class C:nucleus | NUCLEOLAR PROTEIN PUTATIVE |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.1934
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.4784
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.2875
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
| AT5G48240
| PredictedAffinity Capture-MS | FSW = 0.0985
| Class C:nucleus | UNKNOWN PROTEIN |
| AT5G54910
| PredictedAffinity Capture-MS | FSW = 0.1205
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT3G12860
| PredictedAffinity Capture-MS | FSW = 0.0912
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT5G58420
| PredictedAffinity Capture-MS | FSW = 0.4215
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
| AT2G36160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3617
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
| AT1G33140
| PredictedAffinity Capture-MS | FSW = 0.4006
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G12580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1529
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.3603
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.3395
| Unknown | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G34480
| PredictedAffinity Capture-MS | FSW = 0.3228
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
| AT1G79590
| Predictedtwo hybrid | FSW = 0.0184
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
| AT3G13080
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1493
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
| AT1G66580
| PredictedAffinity Capture-MS | FSW = 0.4102
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
| AT3G62870
| PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0183
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G20390
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2090
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
| AT3G59280
| PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
| AT1G18540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.4135
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
| AT1G48830
| PredictedAffinity Capture-MS | FSW = 0.4074
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.4267
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT2G31170
| PredictedAffinity Capture-MS | FSW = 0.1751
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G21640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2340
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
| AT3G19160
| PredictedAffinity Capture-MS | FSW = 0.1678
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
| AT3G49680
| PredictedPhenotypic Enhancement | FSW = 0.0503
| Unknown | BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
| AT3G13580
| PredictedAffinity Capture-MS | FSW = 0.3593
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
| AT3G61430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2071
| Unknown | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
| AT1G63290
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3250
| Unknown | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
| AT1G11250
| PredictedAffinity Capture-MS | FSW = 0.1867
| Unknown | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
| AT1G74050
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile method | FSW = 0.0536
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6C) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.4807
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT5G46430
| PredictedAffinity Capture-MS | FSW = 0.3741
| Unknown | 60S RIBOSOMAL PROTEIN L32 (RPL32B) |
| AT5G19450
| PredictedSynthetic Rescuetwo hybridtwo hybridtwo hybridReconstituted ComplexPhenotypic Enhancement | FSW = 0.0292
| Unknown | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G70600
| PredictedAffinity Capture-MS | FSW = 0.4905
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G02230
| PredictedAffinity Capture-MS | FSW = 0.4178
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19C) |
| AT4G23460
| PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | BETA-ADAPTIN PUTATIVE |
| AT4G15000
| PredictedAffinity Capture-MS | FSW = 0.3894
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
| AT3G53870
| PredictedAffinity Capture-MS | FSW = 0.3208
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
| AT2G18450
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1754
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
| AT3G07140
| PredictedAffinity Capture-MS | FSW = 0.0042
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
| AT1G76400
| PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
| AT4G17620
| PredictedAffinity Capture-MS | FSW = 0.2085
| Unknown | GLYCINE-RICH PROTEIN |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.2579
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT5G09500
| PredictedAffinity Capture-MS | FSW = 0.3728
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.2142
| Unknown | UNKNOWN PROTEIN |
| AT1G61580
| PredictedAffinity Capture-MS | FSW = 0.3878
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G51660
| PredictedAffinity Capture-MS | FSW = 0.0413
| Unknown | CPSF160 NUCLEIC ACID BINDING |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.4110
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT1G17760
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0584
| Unknown | CSTF77 PROTEIN BINDING |
| AT1G54290
| PredictedAffinity Capture-MS | FSW = 0.1626
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.1547
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G13160
| PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | SDA1 FAMILY PROTEIN |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G22240
| PredictedAffinity Capture-MS | FSW = 0.1956
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
| AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.3917
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
| AT1G61010
| PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
| AT2G03040
| PredictedAffinity Capture-MS | FSW = 0.1631
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
| AT2G16090
| PredictedAffinity Capture-MS | FSW = 0.2768
| Unknown | ZINC FINGER PROTEIN-RELATED |
| AT2G16740
| PredictedAffinity Capture-MS | FSW = 0.1317
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G21440
| PredictedAffinity Capture-MS | FSW = 0.1062
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT3G10780
| PredictedAffinity Capture-MS | FSW = 0.0194
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.3630
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G23390
| PredictedAffinity Capture-MS | FSW = 0.4290
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.3963
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT4G11330
| PredictedAffinity Capture-MS | FSW = 0.1104
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
| AT4G36800
| PredictedAffinity Capture-MS | FSW = 0.2579
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
| AT5G06420
| PredictedAffinity Capture-MS | FSW = 0.2088
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
| AT5G14530
| PredictedAffinity Capture-MS | FSW = 0.0416
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G16750
| PredictedAffinity Capture-MS | FSW = 0.2225
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
| AT5G37850
| PredictedAffinity Capture-MS | FSW = 0.2854
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
| AT5G46150
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1918
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
| AT5G47430
| PredictedAffinity Capture-MS | FSW = 0.0443
| Unknown | ZINC ION BINDING |
| AT5G52590 | Predictedtwo hybridtwo hybrid | FSW = 0.0685
| Unknown | ZINC ION BINDING |
| AT2G37540
| PredictedAffinity Capture-MS | FSW = 0.2327
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
| AT3G55280
| PredictedAffinity Capture-MS | FSW = 0.4314
| Unknown | RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G46840
| PredictedAffinity Capture-MS | FSW = 0.1432
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G54200
| PredictedAffinity Capture-MS | FSW = 0.1713
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
| AT5G65900
| PredictedAffinity Capture-MS | FSW = 0.1812
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G09230
| Predictedtwo hybrid | FSW = 0.0474
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT2G16970
| Predictedtwo hybrid | FSW = 0.0094
| Unknown | MEE15 (MATERNAL EFFECT EMBRYO ARREST 15) TETRACYCLINE TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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