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AT3G04920 - ( 40S ribosomal protein S24 (RPS24A) )

69 Proteins interacs with AT3G04920

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.5067	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.5526	Class C: vacuole plasma membrane nucleus	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.5387	Class C: vacuole plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3360	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.6150	Class C: vacuole plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2623	Class C: vacuole plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.4111	Class C: vacuole plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.5757	Class C: vacuole plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.1932	Class C: vacuole plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4433	Class C: vacuole plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4065	Class C: vacuole plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.4146	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.4408	Class C: vacuole nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.4104	Class C: vacuole nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.4973	Class C: vacuole	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2867	Class C: vacuole	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT3G62870	Predicted synthetic growth defect	FSW = 0.0140	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.5726	Class C: vacuole	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.4501	Class C: unclear nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.3424	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.5276	Class C: plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5726	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.5138	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.5884	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.5814	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.6090	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT5G08570	Predicted two hybrid	FSW = 0.0126	Class C: plasma membrane	PYRUVATE KINASE PUTATIVE
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.6720	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.5937	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.5356	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.5284	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G41880	Predicted Affinity Capture-MS	FSW = 0.1577	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AB)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.5528	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3957	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.1623	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.5765	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.4204	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4800	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700	Predicted Affinity Capture-MS	FSW = 0.4806	Class C: nucleus	60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT3G13445	Predicted Affinity Capture-MS	FSW = 0.0116	Class C: nucleus	TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G55520	Predicted Affinity Capture-MS	FSW = 0.0077	Class C: nucleus	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G36010	Predicted two hybrid two hybrid Co-expression	FSW = 0.0137	Class C: nucleus	E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.5067	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3771	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G55860	Predicted two hybrid	FSW = 0.0370	Unknown	UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE
AT3G57650	Predicted two hybrid	FSW = 0.0495	Unknown	LPAT2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE
AT5G02960	Predicted Affinity Capture-MS	FSW = 0.2390	Unknown	40S RIBOSOMAL PROTEIN S23 (RPS23B)
AT5G28060	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.0759	Unknown	40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT5G59240	Predicted Affinity Capture-MS	FSW = 0.3906	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0713	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G52090	Predicted two hybrid two hybrid Co-expression	FSW = 0.0228	Unknown	NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.5070	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.4410	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.2462	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.5268	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT1G18660	Predicted two hybrid two hybrid	FSW = 0.0749	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G47500	Predicted two hybrid two hybrid	FSW = 0.0170	Unknown	ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING
AT5G58020	Predicted two hybrid two hybrid	FSW = 0.0501	Unknown	UNKNOWN PROTEIN
AT1G22240	Predicted Affinity Capture-MS	FSW = 0.2540	Unknown	APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G31660	Predicted Affinity Capture-MS Co-expression	FSW = 0.1616	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G42440	Predicted Affinity Capture-MS	FSW = 0.1164	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0153	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.4879	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.4501	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.5558	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.4207	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.5051	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G32850	Predicted two hybrid	FSW = 0.0215	Unknown	PROTEIN KINASE FAMILY PROTEIN
AT1G51260	Predicted two hybrid	FSW = 0.0548	Unknown	LPAT3 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT3G04920 - ( 40S ribosomal protein S24 (RPS24A) )

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Fasta sequences:

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FSW

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