AtPIN will be upgraded. Please send your suggestions here

AT2G37600 - ( 60S ribosomal protein L36 (RPL36A) )

93 Proteins interacs with AT2G37600

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.5356	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G25520	Predicted two hybrid Co-expression	FSW = 0.0891	Class C: plasma membrane	ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G49910	Predicted Affinity Capture-MS	FSW = 0.4823	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L26 (RPL26A)
AT2G18020	Predicted Affinity Capture-MS	FSW = 0.5294	Class C: plasma membrane	EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.3458	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.6328	Class C: plasma membrane	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.3067	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.6295	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.4933	Class C: plasma membrane	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.4002	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G02450	Predicted Phylogenetic profile method Co-expression	FSW = 0.0777	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36C)
AT5G27850	Predicted Affinity Capture-MS	FSW = 0.2411	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.3140	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.4146	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.2912	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.4447	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.5606	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT3G58510	Predicted Affinity Capture-MS	FSW = 0.1108	Class C: plasma membrane	DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.5699	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.3143	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G27710	Predicted Affinity Capture-MS	FSW = 0.4931	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.5396	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.4030	Class C: plasma membrane	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.4462	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT5G17770	Predicted Affinity Capture-MS	FSW = 0.0259	Class C: plasma membrane	ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE
AT5G46430	Predicted Affinity Capture-MS	FSW = 0.4808	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L32 (RPL32B)
AT1G74270	Predicted Affinity Capture-MS	FSW = 0.2822	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.6295	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76810	Predicted Affinity Capture-MS	FSW = 0.1800	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN
AT4G02230	Predicted Affinity Capture-MS	FSW = 0.4716	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L19 (RPL19C)
AT3G53430	Predicted Affinity Capture-MS	FSW = 0.1650	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L12 (RPL12B)
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.4476	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3586	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G23460	Predicted Affinity Capture-MS	FSW = 0.0465	Class C: plasma membrane	BETA-ADAPTIN PUTATIVE
AT4G11380	Predicted Affinity Capture-MS	FSW = 0.0194	Class C: plasma membrane	BETA-ADAPTIN PUTATIVE
AT1G12920	Predicted Affinity Capture-MS	FSW = 0.0060	Class C: plasma membrane	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.3486	Unknown	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.4508	Unknown	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.4638	Unknown	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G53740	Predicted Phylogenetic profile method Co-expression	FSW = 0.0265	Unknown	60S RIBOSOMAL PROTEIN L36 (RPL36B)
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.6106	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT1G34030	Predicted Affinity Capture-MS	FSW = 0.2782	Unknown	40S RIBOSOMAL PROTEIN S18 (RPS18B)
AT4G10050	Predicted two hybrid two hybrid	FSW = 0.0231	Unknown	HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.5144	Unknown	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.4952	Unknown	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT1G06380	Predicted Affinity Capture-MS	FSW = 0.0913	Unknown	RIBOSOMAL PROTEIN-RELATED
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2549	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G55620	Predicted Affinity Capture-MS	FSW = 0.2041	Unknown	EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.4807	Unknown	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT3G06700	Predicted Affinity Capture-MS	FSW = 0.3829	Unknown	60S RIBOSOMAL PROTEIN L29 (RPL29A)
AT4G26600	Predicted Affinity Capture-MS	FSW = 0.0439	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT3G56990	Predicted Affinity Capture-MS	FSW = 0.0327	Unknown	EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G58660	Predicted Affinity Capture-MS	FSW = 0.2722	Unknown	60S RIBOSOMAL PROTEIN-RELATED
AT2G04038	Predicted two hybrid	FSW = 0.0466	Unknown	ATBZIP48 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 48) DNA BINDING / TRANSCRIPTION FACTOR
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.5579	Unknown	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.3422	Unknown	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT5G15520	Predicted Affinity Capture-MS	FSW = 0.1469	Unknown	40S RIBOSOMAL PROTEIN S19 (RPS19B)
AT1G03330	Predicted two hybrid interaction prediction	FSW = 0.0062	Unknown	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT3G53020	Predicted Affinity Capture-MS	FSW = 0.3819	Unknown	STV1 (SHORT VALVE1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.3686	Unknown	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G72440	Predicted Affinity Capture-MS	FSW = 0.3091	Unknown	EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25)
AT5G55920	Predicted Affinity Capture-MS	FSW = 0.1632	Unknown	NUCLEOLAR PROTEIN PUTATIVE
AT5G19310	Predicted Affinity Capture-MS	FSW = 0.0103	Unknown	HOMEOTIC GENE REGULATOR PUTATIVE
AT5G18380	Predicted Affinity Capture-MS	FSW = 0.0411	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT5G09500	Predicted Affinity Capture-MS	FSW = 0.4453	Unknown	40S RIBOSOMAL PROTEIN S15 (RPS15C)
AT4G17620	Predicted Affinity Capture-MS	FSW = 0.2443	Unknown	GLYCINE-RICH PROTEIN
AT1G10490	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2233	Unknown	UNKNOWN PROTEIN
AT3G56340	Predicted Affinity Capture-MS	FSW = 0.0259	Unknown	40S RIBOSOMAL PROTEIN S26 (RPS26C)
AT1G50920	Predicted Affinity Capture-MS	FSW = 0.2378	Unknown	GTP-BINDING PROTEIN-RELATED
AT5G02960	Predicted Affinity Capture-MS	FSW = 0.2090	Unknown	40S RIBOSOMAL PROTEIN S23 (RPS23B)
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.5445	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G56710	Predicted Affinity Capture-MS	FSW = 0.5038	Unknown	60S RIBOSOMAL PROTEIN L31 (RPL31C)
AT4G36020	Predicted Affinity Capture-MS	FSW = 0.0198	Unknown	CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT1G03530	Predicted Affinity Capture-MS	FSW = 0.1825	Unknown	NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G04170	Predicted Affinity Capture-MS	FSW = 0.0601	Unknown	EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G13160	Predicted Affinity Capture-MS	FSW = 0.2351	Unknown	SDA1 FAMILY PROTEIN
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.0886	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G18830	Predicted Affinity Capture-MS	FSW = 0.0437	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G22240	Predicted Affinity Capture-MS	FSW = 0.2477	Unknown	APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING
AT1G25260	Predicted Affinity Capture-MS	FSW = 0.0998	Unknown	ACIDIC RIBOSOMAL PROTEIN P0-RELATED
AT1G52980	Predicted Affinity Capture-MS	FSW = 0.2160	Unknown	GTP-BINDING FAMILY PROTEIN
AT1G57660	Predicted Affinity Capture-MS	FSW = 0.4115	Unknown	60S RIBOSOMAL PROTEIN L21 (RPL21E)
AT2G27200	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1545	Unknown	GTP-BINDING FAMILY PROTEIN
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0381	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT3G16840	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1470	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT3G18740	Predicted Affinity Capture-MS	FSW = 0.5276	Unknown	60S RIBOSOMAL PROTEIN L30 (RPL30C)
AT3G23390	Predicted Affinity Capture-MS	FSW = 0.5036	Unknown	60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AA)
AT3G24830	Predicted Affinity Capture-MS	FSW = 0.4779	Unknown	60S RIBOSOMAL PROTEIN L13A (RPL13AB)
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.5569	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G14520	Predicted Affinity Capture-MS	FSW = 0.2104	Unknown	PESCADILLO-RELATED
AT5G46190	Predicted Affinity Capture-MS	FSW = 0.0605	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT2G22425	Predicted Affinity Capture-MS	FSW = 0.0224	Unknown	PEPTIDASE
AT5G04430	Predicted Affinity Capture-MS	FSW = 0.0225	Unknown	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G37600 - ( 60S ribosomal protein L36 (RPL36A) )

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown