Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT3G58510 - ( DEAD box RNA helicase putative (RH11) )
67 Proteins interacs with AT3G58510| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G22290
   | Experimentalpull down | FSW = 0.0370
| Class A:nucleusClass B:plasma membraneperoxisomecytosolClass D:nucleus (p = 0.78) | ANAC089 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 89) TRANSCRIPTION FACTOR |
| AT2G18020
| PredictedAffinity Capture-MS | FSW = 0.2049
| Class C:plasma membranenucleus | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT4G31700
| PredictedAffinity Capture-MS | FSW = 0.1485
| Class C:plasma membranenucleus | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G42740
| PredictedAffinity Capture-MS | FSW = 0.1694
| Class C:plasma membranenucleus | RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G49010
| PredictedAffinity Capture-MS | FSW = 0.1122
| Class C:plasma membranenucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G48750
| Predictedinterologs mappinginterologs mapping | FSW = 0.0114
| Class C:plasma membranenucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
| AT3G11510
| PredictedAffinity Capture-MS | FSW = 0.1711
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
| AT2G04390
| PredictedAffinity Capture-MS | FSW = 0.0884
| Class C:plasma membranenucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
| AT2G17360
| PredictedAffinity Capture-MS | FSW = 0.1590
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
| AT2G37270
| PredictedAffinity Capture-MS | FSW = 0.1649
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G27850
| PredictedAffinity Capture-MS | FSW = 0.0972
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
| AT1G12360
| PredictedAffinity Capture-MS | FSW = 0.0263
| Class C:plasma membrane | KEU (KEULE) PROTEIN TRANSPORTER |
| AT1G54270
| Predictedinteraction predictionEnriched domain pairCo-expression | FSW = 0.0201
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.2317
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.1447
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT5G12370
| PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:plasma membrane | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
| AT2G37600
| PredictedAffinity Capture-MS | FSW = 0.1108
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
| AT5G60790
| PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0339
| Class C:plasma membrane | ATGCN1 TRANSPORTER |
| AT3G11400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1440
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
| AT2G42520
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3913
| Class C:peroxisome | DEAD BOX RNA HELICASE PUTATIVE |
| AT5G15200
| PredictedAffinity Capture-MS | FSW = 0.2203
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT5G22440
| PredictedAffinity Capture-MS | FSW = 0.1333
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
| AT3G03920
| PredictedAffinity Capture-MS | FSW = 0.0402
| Class C:nucleus | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
| AT1G77840
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2213
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE |
| AT5G57015
| PredictedAffinity Capture-MS | FSW = 0.0578
| Class C:nucleus | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0637
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT1G44900
| PredictedSynthetic Rescue | FSW = 0.0269
| Class C:nucleus | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
| AT4G17390
| PredictedAffinity Capture-MS | FSW = 0.2029
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT1G48920
| PredictedAffinity Capture-MS | FSW = 0.0381
| Class C:nucleus | ATNUC-L1 NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G05060
| PredictedAffinity Capture-MS | FSW = 0.0557
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT4G18040
| Predictedinterologs mappinginterologs mappingSynthetic Lethalityinteraction prediction | FSW = 0.1004
| Class C:nucleus | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT1G34030 | PredictedAffinity Capture-MS | FSW = 0.1707
| Unknown | 40S RIBOSOMAL PROTEIN S18 (RPS18B) |
| AT5G25780
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1000
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT5G56940
| PredictedAffinity Capture-MS | FSW = 0.0761
| Unknown | RIBOSOMAL PROTEIN S16 FAMILY PROTEIN |
| AT5G40950
| PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G80070
| PredictedSynthetic Rescue | FSW = 0.0144
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT3G54670
| PredictedSynthetic Rescue | FSW = 0.0023
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
| AT2G33340
| PredictedCo-purification | FSW = 0.0391
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| ATCG00160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0166
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
| ATCG00790 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.2871
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT5G63860
| PredictedSynthetic Rescueinteraction prediction | FSW = 0.0174
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| AT4G30800
| PredictedAffinity Capture-MS | FSW = 0.1735
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.1838
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G59760
| PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT1G64600
| PredictedAffinity Capture-MS | FSW = 0.0649
| Unknown | COPPER ION BINDING / METHYLTRANSFERASE |
| AT1G71350
| PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 FAMILY PROTEIN |
| AT1G79150
| PredictedAffinity Capture-MS | FSW = 0.0341
| Unknown | BINDING |
| AT2G03820
| PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
| AT2G28360
| PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
| AT2G37840
| Predictedbiochemical | FSW = 0.0176
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G40700
| PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH17) |
| AT2G46280
| PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G11910
| PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT3G18740
| PredictedAffinity Capture-MS | FSW = 0.1732
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
| AT3G24830
| PredictedAffinity Capture-MS | FSW = 0.1478
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
| AT3G49080
| PredictedAffinity Capture-MS | FSW = 0.0221
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
| AT3G51270
| PredictedAffinity Capture-MS | FSW = 0.1875
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
| AT3G56150
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0916
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
| AT3G60240
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0707
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
| AT4G00660
| PredictedSynthetic Lethality | FSW = 0.0347
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT5G22110
| PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
| AT5G41010
| Predictedinterologs mapping | FSW = 0.0137
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.0542
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT1G07270
| PredictedSynthetic Rescue | FSW = 0.0137
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
| AT2G16440
| PredictedSynthetic Rescue | FSW = 0.0278
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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