Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28360 - ( INVOLVED IN biological_process unknown LOCATED IN endomembrane system EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s SIT4 phosphatase-associated protein (InterProIPR007587) BEST Arabidopsis thaliana protein match is SIT4 phosphatase-associated family protein (TAIRAT1G079901) Has 1431 Blast hits to 1107 proteins in 182 species Archae - 2 Bacteria - 108 Metazoa - 552 Fungi - 305 Plants - 89 Viruses - 18 Other Eukaryotes - 357 (source NCBI BLink) )
38 Proteins interacs with AT2G28360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G67500 | PredictedAffinity Capture-MS | FSW = 0.0075
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT4G36130 | Predictedtwo hybrid | FSW = 0.0354
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT1G30470 | Predictedsynthetic growth defectsynthetic growth defectPhenotypic Enhancement | FSW = 0.1333
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0129
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G19980 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.0200
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G09650 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0280
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G58510 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
AT1G61290 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.1337
| Unknown | SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR |
AT5G59950 | Predictedinteraction prediction | FSW = 0.0159
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0913
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G63810 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
AT3G50670 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0398
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT4G21010 | PredictedPhenotypic Enhancement | FSW = 0.0238
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0298
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0064
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G24500 | PredictedPhenotypic Suppression | FSW = 0.0093
| Unknown | FZF TRANSCRIPTION FACTOR |
AT2G06210 | PredictedPhenotypic Suppression | FSW = 0.0207
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT4G18040 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0276
| Unknown | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT4G02930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0106
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT4G34270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0205
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT1G25510 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0338
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G75660 | PredictedAffinity Capture-MS | FSW = 0.0496
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT2G23070 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0281
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | SNL5 (SIN3-LIKE 5) |
AT4G17510 | PredictedPhenotypic Enhancement | FSW = 0.0330
| Unknown | UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE |
AT5G22840 | PredictedPhenotypic Enhancement | FSW = 0.0132
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G44750 | PredictedPhenotypic Enhancement | FSW = 0.0429
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
AT5G49560 | PredictedAffinity Capture-MS | FSW = 0.0130
| Unknown | UNKNOWN PROTEIN |
AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | BINDING |
AT3G29070 | PredictedAffinity Capture-Westerntwo hybridtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0532
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
AT4G30870 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING |
AT4G36080 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G05700 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) ARGINYLTRANSFERASE |
AT5G09740 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G11240 | Predictedinteraction prediction | FSW = 0.0070
| Unknown | ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE |
AT2G17930 | Predictedinteraction prediction | FSW = 0.0245
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT3G45190 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0156
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454