Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28360 - ( INVOLVED IN biological_process unknown LOCATED IN endomembrane system EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s SIT4 phosphatase-associated protein (InterProIPR007587) BEST Arabidopsis thaliana protein match is SIT4 phosphatase-associated family protein (TAIRAT1G079901) Has 1431 Blast hits to 1107 proteins in 182 species Archae - 2 Bacteria - 108 Metazoa - 552 Fungi - 305 Plants - 89 Viruses - 18 Other Eukaryotes - 357 (source NCBI BLink) )

38 Proteins interacs with AT2G28360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67500

Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT4G36130

Predicted

two hybrid

FSW = 0.0354

Unknown

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT1G30470Predicted

synthetic growth defect

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1333

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0129

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G19980

Predicted

interaction prediction

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.0200

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G09650

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT4G35800

Predicted

Phenotypic Enhancement

FSW = 0.0280

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G58510

Predicted

Affinity Capture-MS

FSW = 0.0311

Unknown

DEAD BOX RNA HELICASE PUTATIVE (RH11)
AT1G61290

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1337

Unknown

SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR
AT5G59950

Predicted

interaction prediction

FSW = 0.0159

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT5G57015

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0913

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G63810

Predicted

Affinity Capture-MS

FSW = 0.0239

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT3G50670

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0398

Unknown

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G21010

Predicted

Phenotypic Enhancement

FSW = 0.0238

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0298

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0064

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G24500

Predicted

Phenotypic Suppression

FSW = 0.0093

Unknown

FZF TRANSCRIPTION FACTOR
AT2G06210

Predicted

Phenotypic Suppression

FSW = 0.0207

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT4G18040

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0276

Unknown

EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT4G02930

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0106

Unknown

ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G34270

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0205

Unknown

TIP41-LIKE FAMILY PROTEIN
AT1G25510

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

FSW = 0.0338

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT1G75660

Predicted

Affinity Capture-MS

FSW = 0.0496

Unknown

XRN3 5-3 EXORIBONUCLEASE
AT2G23070

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0281

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.0364

Unknown

SNL5 (SIN3-LIKE 5)
AT4G17510

Predicted

Phenotypic Enhancement

FSW = 0.0330

Unknown

UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) UBIQUITIN THIOLESTERASE
AT5G22840

Predicted

Phenotypic Enhancement

FSW = 0.0132

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G44750

Predicted

Phenotypic Enhancement

FSW = 0.0429

Unknown

REV1 DNA-DIRECTED DNA POLYMERASE
AT5G49560

Predicted

Affinity Capture-MS

FSW = 0.0130

Unknown

UNKNOWN PROTEIN
AT2G34357Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

BINDING
AT3G29070

Predicted

Affinity Capture-Western

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

FSW = 0.0532

Unknown

PROTEIN TRANSMEMBRANE TRANSPORTER
AT4G30870

Predicted

Phenotypic Enhancement

FSW = 0.0271

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G36080Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT5G05700

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1) ARGINYLTRANSFERASE
AT5G09740

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0234

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G11240

Predicted

interaction prediction

FSW = 0.0070

Unknown

ATE2 (ARGININE-TRNA PROTEIN TRANSFERASE 2) ARGINYLTRANSFERASE
AT2G17930

Predicted

interaction prediction

FSW = 0.0245

Unknown

BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT3G45190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0156

Unknown

SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454