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AT1G19120 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

130 Proteins interacs with AT1G19120

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G22440	Predicted Affinity Capture-RNA	FSW = 0.0246	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT1G20960	Predicted Affinity Capture-MS	FSW = 0.1556	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G20290	Predicted Affinity Capture-MS	FSW = 0.0081	Class C: nucleus	40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT3G12780	Predicted Protein-RNA	FSW = 0.0692	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT2G27710	Predicted Affinity Capture-RNA	FSW = 0.0212	Class C: nucleus	60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT5G08290	Predicted Affinity Capture-MS	FSW = 0.1641	Class C: nucleus	YLS8 CATALYTIC
AT5G67270	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1919	Class C: nucleus	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G58660	Predicted Affinity Capture-MS	FSW = 0.0075	Class C: nucleus	60S RIBOSOMAL PROTEIN-RELATED
AT2G43810	Predicted interaction prediction two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Suppression Co-purification interologs mapping	FSW = 0.4139	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G23290	Predicted Affinity Capture-RNA	FSW = 0.0350	Class C: nucleus	RPL27AB STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G03870	Predicted two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Colocalization Co-purification interologs mapping in vitro interaction prediction Co-expression	FSW = 0.3919	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220	Predicted Affinity Capture-RNA	FSW = 0.1250	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT3G59810	Predicted Affinity Capture-MS in vitro	FSW = 0.1262	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT3G14080	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.1434	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G24490	Predicted Phenotypic Suppression	FSW = 0.0710	Class C: nucleus	RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT2G47640	Predicted Affinity Capture-MS	FSW = 0.0944	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G44530	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2013	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G35910	Predicted Phenotypic Suppression	FSW = 0.1105	Class C: nucleus	3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT2G41500	Predicted Affinity Capture-MS	FSW = 0.1304	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT5G27720	Predicted interaction prediction two hybrid two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interologs mapping in vitro	FSW = 0.1541	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G10710	Predicted two hybrid interaction prediction	FSW = 0.0709	Class C: nucleus	SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670	Predicted two hybrid	FSW = 0.0362	Class C: nucleus	GTC2
AT1G04510	Predicted Co-purification	FSW = 0.0921	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G03330	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Co-purification interologs mapping Co-expression	FSW = 0.2445	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860	Predicted Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-Western Co-purification interologs mapping in vitro interaction prediction Co-expression	FSW = 0.2329	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G21190	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid	FSW = 0.1612	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted interaction prediction two hybrid two hybrid Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification interologs mapping in vitro Co-expression	FSW = 0.2795	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT1G28060	Predicted Affinity Capture-MS	FSW = 0.1358	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G20580	Predicted Affinity Capture-MS	FSW = 0.1175	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G07370	Predicted Phenotypic Suppression	FSW = 0.1348	Class C: nucleus	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT3G19210	Predicted synthetic growth defect	FSW = 0.2125	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740	Predicted Phenotypic Enhancement	FSW = 0.2051	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560	Predicted Phenotypic Enhancement	FSW = 0.1388	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G19740	Predicted Phenotypic Enhancement	FSW = 0.0334	Unknown	PEPTIDASE M28 FAMILY PROTEIN
AT4G17300	Predicted two hybrid	FSW = 0.0549	Unknown	NS1 ASPARAGINE-TRNA LIGASE
AT5G16630	Predicted Phenotypic Suppression	FSW = 0.0392	Unknown	RAD4 DAMAGED DNA BINDING
AT1G80070	Predicted Affinity Capture-MS	FSW = 0.1216	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT1G06380	Predicted Affinity Capture-MS	FSW = 0.0053	Unknown	RIBOSOMAL PROTEIN-RELATED
AT2G33340	Predicted Co-purification	FSW = 0.0817	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G58230	Predicted Phenotypic Enhancement	FSW = 0.0721	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT3G12110	Predicted Phenotypic Enhancement	FSW = 0.0375	Unknown	ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G52640	Predicted synthetic growth defect	FSW = 0.0283	Unknown	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G05570	Predicted interaction prediction	FSW = 0.0132	Unknown	CALS1 (CALLOSE SYNTHASE 1) 13-BETA-GLUCAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G12480	Predicted biochemical	FSW = 0.0027	Unknown	CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT1G70600	Predicted Affinity Capture-RNA	FSW = 0.0279	Unknown	STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G18524	Predicted Phenotypic Suppression	FSW = 0.0829	Unknown	MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT4G26110	Predicted Phenotypic Enhancement	FSW = 0.0651	Unknown	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT5G47010	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0210	Unknown	LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT1G65960	Predicted two hybrid	FSW = 0.0078	Unknown	GAD2 (GLUTAMATE DECARBOXYLASE 2) CALMODULIN BINDING / GLUTAMATE DECARBOXYLASE
AT2G44950	Predicted synthetic growth defect	FSW = 0.1383	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G30990	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	BINDING
AT1G26660	Predicted Affinity Capture-MS two hybrid	FSW = 0.0076	Unknown	C-MYC BINDING PROTEIN PUTATIVE / PREFOLDIN PUTATIVE
AT3G47690	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1566	Unknown	ATEB1A MICROTUBULE BINDING
AT2G31970	Predicted synthetic growth defect	FSW = 0.1509	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT1G70980	Predicted two hybrid	FSW = 0.0545	Unknown	SYNC3 ATP BINDING / AMINOACYL-TRNA LIGASE/ ASPARAGINE-TRNA LIGASE/ ASPARTATE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G57450	Predicted synthetic growth defect	FSW = 0.1532	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130	Predicted Phenotypic Enhancement	FSW = 0.1238	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT2G05170	Predicted Affinity Capture-MS two hybrid	FSW = 0.0431	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G13060	Predicted two hybrid	FSW = 0.0191	Unknown	PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G29540	Predicted two hybrid	FSW = 0.0053	Unknown	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G20850	Predicted synthetic growth defect	FSW = 0.1272	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G11710	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0134	Unknown	ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37560	Predicted Synthetic Lethality	FSW = 0.0930	Unknown	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT5G54260	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1906	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200	Predicted Synthetic Lethality	FSW = 0.0752	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT1G04950	Predicted Phenotypic Enhancement	FSW = 0.0516	Unknown	TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G05000	Predicted two hybrid interaction prediction	FSW = 0.0134	Unknown	TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN
AT1G05910	Predicted Phenotypic Enhancement	FSW = 0.1023	Unknown	CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G07140	Predicted two hybrid interaction prediction	FSW = 0.0141	Unknown	SIRANBP RAN GTPASE BINDING
AT1G04730	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.2169	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G07270	Predicted Synthetic Lethality	FSW = 0.0473	Unknown	CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B)
AT1G10930	Predicted synthetic growth defect synthetic growth defect	FSW = 0.1450	Unknown	RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G29990	Predicted Phenotypic Suppression	FSW = 0.1136	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G32130	Predicted Phenotypic Enhancement	FSW = 0.0568	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49760	Predicted Synthetic Rescue interaction prediction	FSW = 0.0663	Unknown	PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G54140	Predicted Synthetic Lethality	FSW = 0.0520	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G60170	Predicted Affinity Capture-MS	FSW = 0.1630	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G60620	Predicted Phenotypic Enhancement	FSW = 0.0447	Unknown	ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G66740	Predicted Synthetic Lethality	FSW = 0.1810	Unknown	SGA2
AT1G80410	Predicted synthetic growth defect	FSW = 0.1369	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G13680	Predicted Synthetic Lethality	FSW = 0.0188	Unknown	CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT2G44580	Predicted synthetic growth defect	FSW = 0.1990	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.1698	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement interaction prediction	FSW = 0.1311	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G25100	Predicted Synthetic Lethality	FSW = 0.0733	Unknown	CDC45 (CELL DIVISION CYCLE 45)
AT3G42660	Predicted synthetic growth defect	FSW = 0.2669	Unknown	NUCLEOTIDE BINDING
AT3G46960	Predicted Synthetic Rescue Phenotypic Enhancement	FSW = 0.0591	Unknown	ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1873	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G00660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS interaction prediction	FSW = 0.1055	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G03430	Predicted Affinity Capture-MS	FSW = 0.1170	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT5G09740	Predicted synthetic growth defect	FSW = 0.1833	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260	Predicted Phenotypic Suppression	FSW = 0.1001	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10960	Predicted Synthetic Lethality	FSW = 0.1453	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13570	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0839	Unknown	DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G13780	Predicted synthetic growth defect	FSW = 0.1464	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680	Predicted synthetic growth defect	FSW = 0.1826	Unknown	ENDONUCLEASE PUTATIVE
AT5G42000	Predicted Phenotypic Suppression	FSW = 0.0497	Unknown	ORMDL FAMILY PROTEIN
AT5G45600	Predicted Phenotypic Enhancement	FSW = 0.1914	Unknown	GAS41 PROTEIN BINDING
AT5G46030	Predicted Phenotypic Enhancement	FSW = 0.0655	Unknown	UNKNOWN PROTEIN
AT5G55310	Predicted Phenotypic Enhancement	FSW = 0.1218	Unknown	TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT1G29150	Predicted Phenotypic Enhancement	FSW = 0.0496	Unknown	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G34150	Predicted Phenotypic Enhancement	FSW = 0.0568	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G53880	Predicted two hybrid	FSW = 0.0153	Unknown	GTP BINDING / TRANSLATION INITIATION FACTOR
AT2G19170	Predicted two hybrid	FSW = 0.0141	Unknown	SLP3 SERINE-TYPE PEPTIDASE
AT2G27970	Predicted Phenotypic Enhancement	FSW = 0.0451	Unknown	CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G28360	Predicted Phenotypic Enhancement	FSW = 0.0064	Unknown	INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT3G04710	Predicted Phenotypic Suppression	FSW = 0.0286	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G22480	Predicted Phenotypic Suppression	FSW = 0.1001	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22980	Predicted two hybrid interaction prediction	FSW = 0.0078	Unknown	ELONGATION FACTOR TU FAMILY PROTEIN
AT3G54380	Predicted Phenotypic Enhancement	FSW = 0.1347	Unknown	SAC3/GANP FAMILY PROTEIN
AT4G08960	Predicted two hybrid interaction prediction	FSW = 0.0558	Unknown	PHOSPHOTYROSYL PHOSPHATASE ACTIVATOR (PTPA) FAMILY PROTEIN
AT4G22140	Predicted Phenotypic Enhancement	FSW = 0.0774	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G30991	Predicted Affinity Capture-MS	FSW = 0.0047	Unknown	DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G17330	Predicted two hybrid interaction prediction	FSW = 0.0158	Unknown	GAD CALMODULIN BINDING / GLUTAMATE DECARBOXYLASE
AT5G38890	Predicted Synthetic Rescue	FSW = 0.0159	Unknown	EXORIBONUCLEASE-RELATED
AT5G41700	Predicted Phenotypic Enhancement	FSW = 0.0864	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G41880	Predicted Phenotypic Enhancement	FSW = 0.1013	Unknown	POLA3 DNA PRIMASE
AT5G55090	Predicted two hybrid	FSW = 0.0096	Unknown	MAPKKK15 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G63670	Predicted Phenotypic Enhancement	FSW = 0.0752	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT2G45810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0727	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G15770	Predicted interaction prediction interologs mapping	FSW = 0.0757	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
AT3G07120	Predicted synthetic growth defect	FSW = 0.1420	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G55255	Predicted synthetic growth defect	FSW = 0.0737	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G15920	Predicted Synthetic Lethality	FSW = 0.1485	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G22760	Predicted Synthetic Rescue	FSW = 0.0389	Unknown	PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT3G26340	Predicted two hybrid	FSW = 0.0250	Unknown	20S PROTEASOME BETA SUBUNIT E PUTATIVE
AT1G79870	Predicted two hybrid	FSW = 0.0163	Unknown	OXIDOREDUCTASE FAMILY PROTEIN
AT1G60080	Predicted two hybrid Co-expression	FSW = 0.0395	Unknown	3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN
AT2G39260	Predicted two hybrid	FSW = 0.0204	Unknown	RNA BINDING / BINDING / PROTEIN BINDING
AT1G72340	Predicted interaction prediction	FSW = 0.0078	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT1G19120 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

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Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown