AtPIN will be upgraded. Please send your suggestions here

AT5G20290 - ( 40S ribosomal protein S8 (RPS8A) )

123 Proteins interacs with AT5G20290

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G01830	Experimental two hybrid	FSW = 0.0092	Unknown	WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT4G31700	Predicted Affinity Capture-MS	FSW = 0.3580	Class C: plastid plasma membrane nucleus	RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09630	Predicted Affinity Capture-MS	FSW = 0.2529	Class C: plastid plasma membrane nucleus	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT2G42740	Predicted Affinity Capture-MS	FSW = 0.3396	Class C: plastid plasma membrane nucleus	RPL16A STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G09200	Predicted Affinity Capture-MS	FSW = 0.2286	Class C: plastid plasma membrane nucleus	60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B)
AT1G72370	Predicted Affinity Capture-MS Co-expression	FSW = 0.0851	Class C: plastid plasma membrane nucleus	P40 STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07660	Predicted Affinity Capture-MS	FSW = 0.0154	Class C: plastid plasma membrane	HISTONE H4
AT2G17360	Predicted Affinity Capture-MS	FSW = 0.3789	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G48830	Predicted Affinity Capture-MS	FSW = 0.2687	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S7 (RPS7A)
AT2G09990	Predicted Affinity Capture-MS	FSW = 0.3454	Class C: plastid plasma membrane	40S RIBOSOMAL PROTEIN S16 (RPS16A)
AT2G47610	Predicted Affinity Capture-MS	FSW = 0.2531	Class C: plastid nucleus	60S RIBOSOMAL PROTEIN L7A (RPL7AA)
AT5G15200	Predicted Affinity Capture-MS	FSW = 0.5413	Class C: plastid nucleus	40S RIBOSOMAL PROTEIN S9 (RPS9B)
AT5G59690	Predicted Affinity Capture-MS	FSW = 0.0581	Class C: plastid nucleus	HISTONE H4
AT5G67500	Predicted Affinity Capture-MS	FSW = 0.0334	Class C: plastid	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT1G33140	Predicted Affinity Capture-MS	FSW = 0.2522	Class C: plastid	PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G47250	Predicted Affinity Capture-MS	FSW = 0.0676	Class C: plastid	RNA HELICASE PUTATIVE
AT3G13580	Predicted Affinity Capture-MS	FSW = 0.3212	Class C: plastid	60S RIBOSOMAL PROTEIN L7 (RPL7D)
AT3G27100	Predicted two hybrid	FSW = 0.0115	Class C: plastid	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK)
AT3G04770	Predicted Affinity Capture-MS	FSW = 0.0947	Class C: plastid	RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G04920	Predicted Affinity Capture-MS	FSW = 0.3424	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S24 (RPS24A)
AT3G49010	Predicted Affinity Capture-MS	FSW = 0.2310	Class C: plasma membrane nucleus	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G67430	Predicted Affinity Capture-MS	FSW = 0.3303	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT3G11964	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1862	Class C: plasma membrane nucleus	RNA BINDING
AT3G11510	Predicted Affinity Capture-MS	FSW = 0.3778	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S14 (RPS14B)
AT5G39740	Predicted Affinity Capture-MS	FSW = 0.2151	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L5 (RPL5B)
AT2G37190	Predicted Affinity Capture-MS	FSW = 0.3244	Class C: plasma membrane nucleus	60S RIBOSOMAL PROTEIN L12 (RPL12A)
AT4G00100	Predicted Affinity Capture-MS	FSW = 0.5498	Class C: plasma membrane nucleus	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G34670	Predicted Affinity Capture-MS	FSW = 0.3424	Class C: plasma membrane nucleus	40S RIBOSOMAL PROTEIN S3A (RPS3AB)
AT2G37270	Predicted Affinity Capture-MS	FSW = 0.3502	Class C: plasma membrane	ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G07770	Predicted Affinity Capture-MS	FSW = 0.5123	Class C: plasma membrane	RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G34480	Predicted Affinity Capture-MS	FSW = 0.2979	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT4G37640	Predicted biochemical Affinity Capture-MS	FSW = 0.0058	Class C: plasma membrane	ACA2 (CALCIUM ATPASE 2) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING
AT1G73180	Predicted Affinity Capture-MS	FSW = 0.1246	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR-RELATED
AT1G70600	Predicted Affinity Capture-MS	FSW = 0.3544	Class C: plasma membrane	STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G08680	Predicted two hybrid	FSW = 0.0106	Class C: plasma membrane	ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G62300	Predicted Affinity Capture-MS	FSW = 0.0550	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT2G37600	Predicted Affinity Capture-MS	FSW = 0.2912	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L36 (RPL36A)
AT3G11400	Predicted Affinity Capture-MS	FSW = 0.1093	Class C: plasma membrane	EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G
AT3G53870	Predicted Affinity Capture-MS	FSW = 0.3413	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G11420	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0841	Class C: plasma membrane	EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT4G15000	Predicted Affinity Capture-MS	FSW = 0.2641	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L27 (RPL27C)
AT5G22440	Predicted Affinity Capture-MS	FSW = 0.3573	Class C: nucleus	60S RIBOSOMAL PROTEIN L10A (RPL10AC)
AT5G57015	Predicted Affinity Capture-MS	FSW = 0.0521	Class C: nucleus	CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G44680	Predicted two hybrid two hybrid	FSW = 0.0371	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT1G03930	Predicted Affinity Capture-MS	FSW = 0.0308	Class C: nucleus	ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G04600	Predicted Affinity Capture-MS	FSW = 0.2074	Class C: nucleus	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G74060	Predicted Affinity Capture-MS	FSW = 0.2574	Class C: nucleus	60S RIBOSOMAL PROTEIN L6 (RPL6B)
AT4G25630	Predicted Affinity Capture-MS	FSW = 0.2812	Class C: nucleus	FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT4G17390	Predicted Affinity Capture-MS	FSW = 0.3601	Class C: nucleus	60S RIBOSOMAL PROTEIN L15 (RPL15B)
AT4G29390	Predicted Affinity Capture-MS	FSW = 0.1353	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT3G56990	Predicted Affinity Capture-MS	FSW = 0.1916	Class C: nucleus	EDA7 (EMBRYO SAC DEVELOPMENT ARREST 7)
AT3G18130	Predicted Affinity Capture-MS	FSW = 0.1041	Class C: nucleus	RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT3G05060	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2004	Class C: nucleus	SAR DNA-BINDING PROTEIN PUTATIVE
AT3G12860	Predicted Affinity Capture-MS	FSW = 0.2545	Class C: nucleus	NUCLEOLAR PROTEIN NOP56 PUTATIVE
AT3G62310	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1575	Class C: nucleus	RNA HELICASE PUTATIVE
AT1G07480	Predicted two hybrid	FSW = 0.0263	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT / TFIIA LARGE SUBUNIT (TFIIA-L)
AT5G59230	Predicted two hybrid	FSW = 0.0177	Class C: nucleus	TRANSCRIPTION FACTOR-RELATED
AT4G14300	Predicted Affinity Capture-MS	FSW = 0.0426	Class C: nucleus	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / HNRNP PUTATIVE
AT5G66540	Predicted Affinity Capture-MS	FSW = 0.2764	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RRNA PROCESSING LOCATED IN CYTOSOL NUCLEOLUS NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN COMPLEX SUBUNIT MPP10P (INTERPROIPR012173) MPP10 PROTEIN (INTERPROIPR007151) HAS 76240 BLAST HITS TO 38667 PROTEINS IN 1479 SPECIES ARCHAE - 252 BACTERIA - 6537 METAZOA - 31185 FUNGI - 9935 PLANTS - 3937 VIRUSES - 750 OTHER EUKARYOTES - 23644 (SOURCE NCBI BLINK)
AT1G07470	Predicted two hybrid	FSW = 0.0199	Class C: nucleus	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT3G21540	Predicted Affinity Capture-MS	FSW = 0.1714	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G57000	Predicted Affinity Capture-MS	FSW = 0.2511	Class C: nucleus	NUCLEOLAR ESSENTIAL PROTEIN-RELATED
AT5G58420	Predicted Affinity Capture-MS	FSW = 0.4655	Class C: nucleus	40S RIBOSOMAL PROTEIN S4 (RPS4D)
AT1G63810	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2571	Class C: nucleus	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK)
AT1G19120	Predicted Affinity Capture-MS	FSW = 0.0081	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G18040	Predicted Affinity Capture-MS	FSW = 0.0888	Class C: nucleus	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G66580	Predicted Affinity Capture-MS	FSW = 0.3307	Unknown	60S RIBOSOMAL PROTEIN L10 (RPL10C)
AT5G25780	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0962	Unknown	EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT4G11010	Predicted Affinity Capture-MS	FSW = 0.0157	Unknown	NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE
AT4G23900	Predicted Affinity Capture-MS	FSW = 0.0468	Unknown	NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT4G17620	Predicted Affinity Capture-Western	FSW = 0.1714	Unknown	GLYCINE-RICH PROTEIN
AT5G59240	Predicted Affinity Capture-MS Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.4921	Unknown	40S RIBOSOMAL PROTEIN S8 (RPS8B)
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0608	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G47990	Predicted Affinity Capture-MS	FSW = 0.1756	Unknown	SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING
AT5G22100	Predicted Affinity Capture-MS	FSW = 0.1120	Unknown	RNA CYCLASE FAMILY PROTEIN
AT1G61580	Predicted Affinity Capture-MS	FSW = 0.3214	Unknown	RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G30800	Predicted Affinity Capture-MS	FSW = 0.4095	Unknown	40S RIBOSOMAL PROTEIN S11 (RPS11B)
AT1G10490	Predicted Affinity Capture-MS	FSW = 0.4043	Unknown	UNKNOWN PROTEIN
AT1G11800	Predicted two hybrid	FSW = 0.0063	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G63160	Predicted two hybrid	FSW = 0.0050	Unknown	REPLICATION FACTOR C 40 KDA PUTATIVE
AT5G11010	Predicted two hybrid two hybrid	FSW = 0.0462	Unknown	PRE-MRNA CLEAVAGE COMPLEX-RELATED
AT1G79975	Predicted two hybrid two hybrid	FSW = 0.0236	Unknown	PRE-MRNA CLEAVAGE COMPLEX-RELATED
AT2G39840	Predicted two hybrid two hybrid	FSW = 0.0335	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G03570	Predicted two hybrid two hybrid	FSW = 0.0212	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOSOL EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UNCHARACTERISED CONSERVED PROTEIN UCP013022 (INTERPROIPR016607) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIGNAL TRANSDUCER (TAIRAT4G400501) HAS 153 BLAST HITS TO 150 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 104 FUNGI - 0 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK)
AT3G46220	Predicted two hybrid two hybrid	FSW = 0.0179	Unknown	UNKNOWN PROTEIN
AT4G06634	Predicted two hybrid	FSW = 0.0081	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT4G13350	Predicted two hybrid	FSW = 0.0106	Unknown	NIG (NSP (NUCLEAR SHUTTLE PROTEIN)-INTERACTING GTPASE) GTP BINDING / GTPASE
AT4G40050	Predicted two hybrid	FSW = 0.0254	Unknown	SIGNAL TRANSDUCER
AT5G10260	Predicted two hybrid two hybrid	FSW = 0.0037	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G47080	Predicted two hybrid	FSW = 0.0058	Unknown	CKB1 PROTEIN KINASE REGULATOR
AT5G59160	Predicted two hybrid	FSW = 0.0205	Unknown	TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G31660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.4105	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G35750	Predicted Affinity Capture-MS	FSW = 0.0159	Unknown	APUM10 (ARABIDOPSIS PUMILIO 10) RNA BINDING / BINDING
AT1G42440	Predicted Affinity Capture-MS	FSW = 0.2172	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK)
AT1G69070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3113	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK)
AT2G17250	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2610	Unknown	EMB2762 (EMBRYO DEFECTIVE 2762)
AT2G34357	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.3021	Unknown	BINDING
AT2G46280	Predicted Affinity Capture-MS	FSW = 0.0460	Unknown	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G24080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2355	Unknown	KRR1 FAMILY PROTEIN
AT3G55280	Predicted Affinity Capture-MS	FSW = 0.2612	Unknown	RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G07410	Predicted Affinity Capture-MS	FSW = 0.1883	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G28200	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.2508	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RNA PROCESSING LOCATED IN INTRACELLULAR EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RNA-PROCESSING PROTEIN HAT HELIX (INTERPROIPR003107) U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 6 (INTERPROIPR013949) HAS 352 BLAST HITS TO 342 PROTEINS IN 144 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 111 FUNGI - 130 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 87 (SOURCE NCBI BLINK)
AT4G28450	Predicted Affinity Capture-MS	FSW = 0.2139	Unknown	NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G08420	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.3448	Unknown	RNA BINDING
AT1G09150	Predicted Affinity Capture-MS	FSW = 0.0278	Unknown	PSEUDOURIDINE SYNTHASE AND ARCHAEOSINE TRANSGLYCOSYLASE (PUA) DOMAIN-CONTAINING PROTEIN
AT1G15440	Predicted Affinity Capture-MS	FSW = 0.1865	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G16280	Predicted Affinity Capture-MS	FSW = 0.0572	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G16350	Predicted Affinity Capture-MS	FSW = 0.1092	Unknown	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT1G73570	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0210	Unknown	SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT3G51270	Predicted Affinity Capture-MS co-fractionation Co-fractionation	FSW = 0.1659	Unknown	ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT3G56150	Predicted Affinity Capture-MS	FSW = 0.0836	Unknown	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR
AT4G19210	Predicted Affinity Capture-MS	FSW = 0.2020	Unknown	ATRLI2 TRANSPORTER
AT4G30991	Predicted Affinity Capture-MS	FSW = 0.3053	Unknown	ATRLI2 TRANSPORTER
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0519	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G42190	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G46190	Predicted Affinity Capture-MS	FSW = 0.0770	Unknown	KH DOMAIN-CONTAINING PROTEIN
AT5G65900	Predicted Affinity Capture-MS	FSW = 0.2389	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT5G66100	Predicted Affinity Capture-MS	FSW = 0.0861	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT3G13640	Predicted Affinity Capture-MS	FSW = 0.0969	Unknown	ATRLI1 TRANSPORTER
AT5G04430	Predicted Affinity Capture-MS	FSW = 0.0357	Unknown	BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)) NUCLEIC ACID BINDING
AT3G22860	Predicted Affinity Capture-MS	FSW = 0.0553	Unknown	TIF3C2 TRANSLATION INITIATION FACTOR
AT3G13224	Predicted Affinity Capture-MS	FSW = 0.0208	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G29550	Predicted Affinity Capture-MS	FSW = 0.0441	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT5G20290 - ( 40S ribosomal protein S8 (RPS8A) )

Unknown

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Class C:

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown

Unknown